MirGeneDB 3.0

MirGeneDB ID

Dmo-Mir-279-P1

Family name MIR-279 (all species)
Seed GACUAGA
Species Fruit fly (Drosophila mojavensis)
MiRBase ID dmo-mir-286
Paralogues Dmo-Mir-279-P2  Dmo-Mir-279-P3 
Orthologues Aae-Mir-279-P1a  Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Aga-Mir-279-P1a  Aga-Mir-279-P1b  Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dma-Mir-279-P1c  Dma-Mir-279-P1d  Dme-Mir-279-P1  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P1c  Tca-Mir-279-P1d 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Dmoj_caf1)
scaffold_6496: 20936799-20936877 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P1)
Mir-2-P6c scaffold_6496: 20935964-20936029 [-] Ensembl
Mir-2-P6b scaffold_6496: 20936142-20936210 [-] Ensembl
Mir-2-P6a scaffold_6496: 20936318-20936375 [-] Ensembl
Mir-2-P5 scaffold_6496: 20936468-20936531 [-] Ensembl
Mir-9-P9 scaffold_6496: 20936638-20936694 [-] Ensembl
Mir-279-P1 scaffold_6496: 20936799-20936877 [-] Ensembl
Mir-3-P2 scaffold_6496: 20936995-20937055 [-] Ensembl
Mir-3-P1 scaffold_6496: 20937123-20937187 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGAAAAUUAUAAAAUUUUAAAAUUAAAUGGCGAUUGUCGGUAUGGUCUCUUUUUCAACAUAUACACCAAACAUUCUAUAUAAAGUGACUAGACCGAACACUCGUGCUAUAAUUUUAAAAUGUUCAACAAUUUCAAUU
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Structure
        10          20        30         40        50        60        
UUCGAAAAUUAUAAAAU--          AAUG    U  -|    A     U  UUUUCAACAUAUACA 
                   UUUAAAAUUA    GCGA UG UCGGU UGGUC CU               C
                   AAAUUUUAAU    UGCU AC AGCCA AUCAG GA               C
UUAACUUUAACAACUUGUA          AUCG    C  A^    G     U  AAUAUAUCUUACAAA 
       130       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Em Fe Ma Ma
Star sequence

Dmo-Mir-279-P1_5p*

mirBase accessionNone
Sequence
0- GGCGAUUGUCGGUAUGGUCUCU -22
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Mature sequence

Dmo-Mir-279-P1_3p

mirBase accessionMIMAT0008643
Sequence
56- UGACUAGACCGAACACUCGUGCU -79
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