MirGeneDB 3.0
MirGeneDB ID

Aga-Mir-279-P3

Family name MIR-279 (all species)
Seed GACUAGA
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-996
Paralogues Aga-Mir-279-P1a  Aga-Mir-279-P1b  Aga-Mir-279-P2  Aga-Mir-279-P25 
Orthologues Aae-Mir-279-P3  Agr-Mir-279  Bge-Mir-279-P3  Bpl-Mir-279  Dan-Mir-279-P3  Dlo-Mir-279-P3  Dma-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-P3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P3  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-P3  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-o3  Tca-Mir-279-P3 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)		 NC_064601.1: 53947088-53947150 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P3)		 Mir-279-P3 NC_064601.1: 53947088-53947150 [-] Ensembl
Mir-279-P2 NC_064601.1: 53947583-53947645 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCAGCAAUGCAUUAUUCUCCGCUUUGUAGGCGAGCAUGUUUUCUAGUACACGUUUUCAGUUGAAGUUUCGUGACUAGAUUACAUGCUCGUCUAUAAUACUGAGAUCGACCAUAAAUGUGUGU
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Structure
        10          20        30        40        50        60 
CUCAGCAAUGCAUUAUU--|  CGCU                UU      A    UUUUCAG 
                   CUC    UUGUAGGCGAGCAUGU  UCUAGU CACG       U
                   GAG    AAUAUCUGCUCGUACA  AGAUCA GUGC       U
UGUGUGUAAAUACCAGCUA^  UCAU                UU      -    UUUGAAG 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-279-P3_5p*
mirBase accessionNone
Sequence 
0- GCGAGCAUGUUUUCUAGUACACG -23
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Mature sequence

Aga-Mir-279-P3_3p
mirBase accessionMIMAT0005528
Sequence 
41- UGACUAGAUUACAUGCUCGUCU -63
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