MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-279-P25

Family name MIR-279 (all species)
Seed GACUAGA
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-2945
Paralogues Aga-Mir-279-P1a  Aga-Mir-279-P1b  Aga-Mir-279-P2  Aga-Mir-279-P3 
Orthologues Aae-Mir-279-P25  Agr-Mir-279  Asu-Mir-279-o25  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Culicidae
Node of Origin (family) Protostomia
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064602.1: 10240546-10240611 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P25)
Mir-10-P3 NC_064602.1: 10196013-10196074 [-] Ensembl
Let-7 NC_064602.1: 10196556-10196618 [-] Ensembl
Mir-10-P2 NC_064602.1: 10200512-10200575 [-] Ensembl
Mir-279-P25 NC_064602.1: 10240546-10240611 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUAAUGUAACUCAUCAACUGUCCGUCCCGAGCGAGUCUGCACUCUGGAAUAACAUGUCGGAUUCGUAUACUCAUGACUAGAGGCAGACUCGUUUGGGAAGGAUGGUACCCGUUCGUCGCUUAUCG
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Structure
        10          20        30        40        50        60     
UGUAAUGUAACUCAUCA--|      G                A      AAUAA    UCGGAUU 
                   ACUGUCC UCCCGAGCGAGUCUGC CUCUGG     CAUG       \
                   UGGUAGG AGGGUUUGCUCAGACG GAGAUC     GUAC       C
GCUAUUCGCUGCUUGCCCA^      A                -      A----    UCAUAUG 
    120       110       100        90         80            70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-279-P25_5p*

mirBase accessionMIMAT0041515
Sequence
0- AGCGAGUCUGCACUCUGGAAUAACAUG -27
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Mature sequence

Aga-Mir-279-P25_3p

mirBase accessionMIMAT0041516
Sequence
44- UGACUAGAGGCAGACUCGUUUG -66
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