MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-279-P2

Family name MIR-279 (all species)
Seed GACUAGA
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-279
Paralogues Aga-Mir-279-P1a  Aga-Mir-279-P1b  Aga-Mir-279-P3  Aga-Mir-279-P25 
Orthologues Aae-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bko-Mir-279-o2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064601.1: 53947583-53947645 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P2)
Mir-279-P3 NC_064601.1: 53947088-53947150 [-] Ensembl
Mir-279-P2 NC_064601.1: 53947583-53947645 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUUAGAAAAAACUUUUCCUAUCAGUGUAAAUGGGUGUGAAUCUAGUGAUUUCACAUGAAUUUUCAAUUGUGACUAGAUCCACACUCAUUAAUGUUGUUUGGAACCAUUCAGCCGACAAUCA
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Structure
        10          20        30        40        50        60   
UGUUUAGAAAAAACUUU--|  UAU   UG A          A      UGAUU     UGAAU 
                   UCC   CAG  U AAUGGGUGUG AUCUAG     UCACA     U
                   AGG   GUU  A UUACUCACAC UAGAUC     AGUGU     U
ACUAACAGCCGACUUACCA^  UUU   GU A          C      -----     UAACU 
 120       110       100        90        80             70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-279-P2_5p*

mirBase accessionNone
Sequence
0- AAUGGGUGUGAAUCUAGUGAUUUCACA -27
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Mature sequence

Aga-Mir-279-P2_3p

mirBase accessionMIMAT0001512
Sequence
41- UGACUAGAUCCACACUCAUUAA -63
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