MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-279-P2

Family name MIR-279 (all species)
Seed GACUAGA
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-279
Paralogues Aae-Mir-279-P1a  Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Aae-Mir-279-P3  Aae-Mir-279-P25 
Orthologues Aga-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bko-Mir-279-o2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Aaeg_L3)		 supercont1.437: 572258-572322 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P2)		 Mir-279-P3 supercont1.437: 567506-567574 [-] Ensembl
Mir-279-P2 supercont1.437: 572258-572322 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGCCGAGUACCAAACAUCCCAACGGUUGUCGAUGGGUGUGAAUCUAGUGUUUCACAUGAUUUUCGAUAGCCUGUGACUAGAUCCACACUCAUUAACAAAAGUUGCCGGAAAGCAUCCACUUCCAU
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Structure
        10          20        30        40        50        60  
CGCCGAGUACCAAACAUCC--|   GG    CG         A       GUUUCACAUGAUU 
                     CAAC  UUGU  AUGGGUGUG AUCUAGU             \
                     GUUG  AACA  UACUCACAC UAGAUCA             U
UACCUUCACCUACGAAAGGCC^   AA    AU         C       GUGUCCGAUAGCU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So To To To
Star sequence

Aae-Mir-279-P2_5p*
mirBase accessionNone
Sequence 
0- GAUGGGUGUGAAUCUAGUGUUU -22
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Mature sequence

Aae-Mir-279-P2_3p
mirBase accessionMIMAT0014288
Sequence 
43- UGACUAGAUCCACACUCAUUAA -65
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