Mir-279-P3

MirGeneDB ID

Aae-Mir-279-P3

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Yellow fever mosquito (Aedes aegypti)

MiRBase ID

aae-mir-996

Paralogues

Aae-Mir-279-P1a Aae-Mir-279-P1b1 Aae-Mir-279-P1b2 Aae-Mir-279-P2 Aae-Mir-279-P25

Orthologues

Aga-Mir-279-P3 Agr-Mir-279 Bge-Mir-279-P3 Bpl-Mir-279 Dan-Mir-279-P3 Dlo-Mir-279-P3 Dma-Mir-279-P3 Dme-Mir-279-P3 Dmo-Mir-279-P3 Dpu-Mir-279-P3 Dsi-Mir-279-P3 Dya-Mir-279-P3 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gpa-Mir-279-P3 Gsa-Mir-279 Gsp-Mir-279 Hme-Mir-279-P3 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279 Tca-Mir-279-o3 Tca-Mir-279-P3

Node of Origin (locus)

Pancrustacea

Node of Origin (family)

Protostomia

Genome context
(Aaeg_L3)

supercont1.437: 567506-567574 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-279-P3)

Mir-279-P3 supercont1.437: 567506-567574 [-] Ensembl
Mir-279-P2 supercont1.437: 572258-572322 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCCGCGGAGGAAGAAACUCAAUUUUCGUCGGCGUGCAUGAAUCUGGUGCACGGUUUUCCAGUUGUAAUAUCGCUUCGUGACUAGAUUACAUGCUCGUCUAUGAAGUUGAGAUCCGGCAACGCUACCAAG

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Structure

        10           20        30         40        50        60    
CCCGCGGAGGAAGAAAC---|      U   C    U     -        G    GUUUUCCAGUU 
                    UCAAUUU CGU GGCG GCAUG AAUCUGGU CACG           \
                    AGUUGAA GUA CUGC CGUAC UUAGAUCA GUGC           G
GAACCAUCGCAACGGCCUAG^      -   U    U     A        -    UUCGCUAUAAU 
       120       110        100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	To	To	To

Star sequence

Aae-Mir-279-P3_5p*

mirBase accession

None

Sequence

0- GCGUGCAUGAAUCUGGUGCACG -22

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Mature sequence

Aae-Mir-279-P3_3p

mirBase accession

MIMAT0014251

Sequence

47- UGACUAGAUUACAUGCUCGUCU -69

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