MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-9-P9c-v1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-9e
Paralogues Tca-Mir-9-P9a  Tca-Mir-9-P9b-v1  Tca-Mir-9-P9b-v2  Tca-Mir-9-P9c-v2  Tca-Mir-9-P10  Tca-Mir-9-P12 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P9  Dgr-Mir-9  Dlo-Mir-9-P9  Dma-Mir-9-P9  Dme-Mir-9-P9  Dmo-Mir-9-P9  Dpu-Mir-9-P9  Dsi-Mir-9-P9  Dya-Mir-9-P9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) T. castaneum
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)
LG9: 11087-11146 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P9c-v1)
Mir-2-P5e LG9: 10977-11036 [-] Ensembl
Mir-9-P9c-v1 LG9: 11087-11146 [-] Ensembl
Mir-9-P9c-v2 LG9: 11088-11145 [-] Ensembl
Mir-279-P1d LG9: 11214-11274 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCAACAGGUUGCAAGUCGGAUAUAUUCUUCUUUGGUGAUCUAGUUGUAUGAGUGUUUUAUAUAUCAUAAAGCUGGUUCAGCAAAGCAGAUUGCAUUCGACUCUUCGACGAGCCGAGCG
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Structure
        10          20        30        40        50         
GUGCAACAGGUUGCAAG--|     A  U   U     G   U      G     GUGUU 
                   UCGGAU UA UCU CUUUG UGA CUAGUU UAUGA     U
                   AGCUUA GU AGA GAAAC ACU GGUCGA AUACU     U
GCGAGCCGAGCAGCUUCUC^     C  U   C     G   U      A     AUAUA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-9-P9c-v1_5p

mirBase accessionMIMAT0023581
Sequence
0- UCUUUGGUGAUCUAGUUGUAUGA -23
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Star sequence

Tca-Mir-9-P9c-v1_3p*

mirBase accessionMIMAT0023582
Sequence
37- AUAAAGCUGGUUCAGCAAAGCAG -60
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