Mir-9-P12

MirGeneDB ID

Tca-Mir-9-P12

Family name

MIR-9 (all species)

Seed

UUUGGUA

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-9b

Paralogues

Tca-Mir-9-P9a Tca-Mir-9-P9b-v1 Tca-Mir-9-P9b-v2 Tca-Mir-9-P9c-v1 Tca-Mir-9-P9c-v2 Tca-Mir-9-P10

Orthologues

Aae-Mir-9-P12-v1 Aae-Mir-9-P12-v2 Aga-Mir-9-P12 Agr-Mir-9 Bfl-Mir-9 Bge-Mir-9-P12-v1 Bge-Mir-9-P12-v2 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P12-v1 Dan-Mir-9-P12-v2 Dgr-Mir-9 Dlo-Mir-9-P12-v1 Dlo-Mir-9-P12-v2 Dme-Mir-9-P12-v1 Dme-Mir-9-P12-v2 Dmo-Mir-9-P12-v1 Dmo-Mir-9-P12-v2 Dsi-Mir-9-P12-v1 Dsi-Mir-9-P12-v2 Dya-Mir-9-P12-v1 Dya-Mir-9-P12-v2 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gpa-Mir-9-P12-v1 Gpa-Mir-9-P12-v2 Gsa-Mir-9 Gsp-Mir-9 Hme-Mir-9-P12 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Tcas5.2)

KQ972687: 113154-113211 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GGUUCCAACAGGUGGGGGCCGAUUUUGUUACUUUGGUAAUUUAGCGUUUGUGAUUUUAUUUGAGUCAUAAAGCUAGAUUACCAAAGCAAUGCGGUUGGCAUUGCGUCGUGGAGAUUGG

Get precursor sequence

Structure

        10          20        30        40        50         
GGUUCCAACAGGUGGGG--|     UU    A               G       UUUUA 
                   GCCGAU  UGUU CUUUGGUAAUUUAGC UUUGUGA     \
                   CGGUUG  GUAA GAAACCAUUAGAUCG AAAUACU     U
GGUUAGAGGUGCUGCGUUA^     GC    C               -       GAGUU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-9-P12_5p

mirBase accession

MIMAT0019134

Sequence

0- CUUUGGUAAUUUAGCGUUUGUGA -23

Get sequence

Co-mature sequence

Tca-Mir-9-P12_3p

mirBase accession

MIMAT0019135

Sequence

36- AUAAAGCUAGAUUACCAAAGCA -58

Get sequence