MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-9-P12-v1

Family name MIR-9 (all species)
Seed AAAGCUA
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-9-P10  Gpa-Mir-9-P11  Gpa-Mir-9-P12-v2  Gpa-Mir-9-P13 
Orthologues Aae-Mir-9-P12-v1  Aae-Mir-9-P12-v2  Aga-Mir-9-P12  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P12-v1  Bge-Mir-9-P12-v2  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P12-v1  Dan-Mir-9-P12-v2  Dgr-Mir-9  Dlo-Mir-9-P12-v1  Dlo-Mir-9-P12-v2  Dme-Mir-9-P12-v1  Dme-Mir-9-P12-v2  Dmo-Mir-9-P12-v1  Dmo-Mir-9-P12-v2  Dsi-Mir-9-P12-v1  Dsi-Mir-9-P12-v2  Dya-Mir-9-P12-v1  Dya-Mir-9-P12-v2  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P12  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  Tca-Mir-9-P12  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(GpalI1)		 Scaffold60: 382326-382387 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUGUGCUAUGCGCAUGUUAUAUUUCAUUGCUUUGGCGCUUUAGCUGUAUGAUAGAUUUGAUACCUUCAUAAAGCUAGAUUACCAAAGCAUUGAAAAUGCGCCUACAACUGCAGUAAUUUU
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Structure
        10        20          30        40        50        60
AUGUGUGCUAUGCGCAUGUUAUA--|    U        CGC       G    AUAGAUU 
                         UUUCA UGCUUUGG   UUUAGCU UAUG       U
                         AAAGU ACGAAACC   AGAUCGA AUAC       G
UUUUAAUGACGUCAACAUCCGCGUA^    U        AUU       A    UUCCAUA 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl
Star sequence

Gpa-Mir-9-P12-v1_5p*
mirBase accessionNone
Sequence 
0- GCUUUGGCGCUUUAGCUGUAUG -22
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Mature sequence

Gpa-Mir-9-P12-v1_3p
mirBase accessionNone
Sequence 
40- UAAAGCUAGAUUACCAAAGCAU -62
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