MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-9-P11

Family name MIR-9 (all species)
Seed CUUUGGU
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-9-P10  Gpa-Mir-9-P12-v1  Gpa-Mir-9-P12-v2  Gpa-Mir-9-P13 
Orthologues Aae-Mir-9-P11  Aga-Mir-9-P11  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P11  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P11  Dgr-Mir-9  Dme-Mir-9-P11  Dmo-Mir-9-P11  Dsi-Mir-9-P11  Dya-Mir-9-P11  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P11  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(GpalI1)		 Scaffold60: 384436-384498 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAACAAAUAAUCCAUACAUUUUGGUUGGUUCUUUGGUAUUCUAGCUGUAGAUUCAUAAUAAACUAUCAUCUAAAGCUUUUAUACCAAAGCUCCAGCUUAAAUUGCUUGCUGCACUUUGUUUA
Get precursor sequence
Structure
        10          20        30        40        50        60 
UUAACAAAUAAUCCAUAC--|   U      UU         UCU    G    UUCAUAAU 
                    AUUU GGUUGG  CUUUGGUAU   AGCU UAGA        \
                    UAAA UCGACC  GAAACCAUA   UCGA AUCU        A
AUUUGUUUCACGUCGUUCGU^   U      UC         UUU    A    ACUAUCAA 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To To To To To To To To To To To To To To To To To To To To To
Mature sequence

Gpa-Mir-9-P11_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUAUUCUAGCUGUAGA -22
Get sequence
Star sequence

Gpa-Mir-9-P11_3p*
mirBase accessionNone
Sequence 
41- UAAAGCUUUUAUACCAAAGCUC -63
Get sequence