Mir-9-P11

MirGeneDB ID

Dan-Mir-9-P11

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

dan-mir-9c

Paralogues

Dan-Mir-9-P9 Dan-Mir-9-P10 Dan-Mir-9-P12-v1 Dan-Mir-9-P12-v2 Dan-Mir-9-P13

Orthologues

Aae-Mir-9-P11 Bfl-Mir-9 Bge-Mir-9-o11-v1 Bge-Mir-9-o11-v2 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dme-Mir-9-P11 Dmo-Mir-9-P11 Dsi-Mir-9-P11 Dya-Mir-9-P11 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Diptera

Node of Origin (family)

Bilateria

Genome context
(Dana_caf1)

scaffold_12916: 15865484-15865553 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P11)

Mir-9-P13 scaffold_12916: 15864555-15864614 [-] Ensembl
Mir-9-P12-v1 scaffold_12916: 15864734-15864795 [-] Ensembl
Mir-9-P12-v2 scaffold_12916: 15864734-15864795 [-] Ensembl
Mir-306 scaffold_12916: 15864875-15864933 [-] Ensembl
Mir-9-P11 scaffold_12916: 15865484-15865553 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CACGCACUCCCUUUCAUUAUUUUUGCUGUUUCUUUGGUAUUCUAGCUGUAGAUUGUUUCACGCACAUUGUAUAUCAUCUAAAGCUUUUAUACCAAAGCUCCAGCUUAAAUUGCUUAACAACGCACCAACA

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Structure

        10          20        30        40        50        60    
CACGCACUCCCUUUCAUU--|   UU    UUU         UCU    G    UUGUUUCACGC 
                    AUUU  GCUG   CUUUGGUAU   AGCU UAGA           A
                    UAAA  CGAC   GAAACCAUA   UCGA AUCU           C
ACAACCACGCAACAAUUCGU^   UU    CUC         UUU    A    ACUAUAUGUUA 
.       120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Da

Mature sequence

Dan-Mir-9-P11_5p

mirBase accession

MIMAT0008456

Sequence

0- UCUUUGGUAUUCUAGCUGUAGA -22

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Star sequence

Dan-Mir-9-P11_3p*

mirBase accession

None

Sequence

48- UAAAGCUUUUAUACCAAAGCUC -70

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