Mir-9-P11

MirGeneDB ID

Aae-Mir-9-P11

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Yellow fever mosquito (Aedes aegypti)

MiRBase ID

aae-mir-9c

Paralogues

Aae-Mir-9-P10a Aae-Mir-9-P10b Aae-Mir-9-P12-v1 Aae-Mir-9-P12-v2 Aae-Mir-9-P13

Orthologues

Bfl-Mir-9 Bge-Mir-9-o11-v1 Bge-Mir-9-o11-v2 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P11 Dme-Mir-9-P11 Dmo-Mir-9-P11 Dsi-Mir-9-P11 Dya-Mir-9-P11 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Diptera

Node of Origin (family)

Bilateria

Genome context
(Aaeg_L3)

supercont1.785: 186231-186302 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P11)

Mir-9-P11 supercont1.785: 186231-186302 [+] Ensembl
Mir-306 supercont1.785: 213078-213173 [+] Ensembl
Mir-9-P12-v1 supercont1.785: 213277-213338 [+] Ensembl
Mir-9-P12-v2 supercont1.785: 213278-213337 [+] Ensembl
Mir-9-P13 supercont1.785: 213584-213648 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUAUCCGUAUCCGUAUGAUUUCCGGCUGAAUCUUUGGUAUUCUAGCUGUAGAAUGUUGAGCUUUGUGAUAUGGUAUCUUCUAAAGCUUUAGUACCAGAGGUCCAACUGGGAAUUGCUUGCUACCGCUGCUGC

Get precursor sequence

Structure

        10          20        30        40        50        60     
GUAUCCGUAUCCGUAUG--|       C  A            CU    G    AUGUUGAGCUUU 
                   AUUUCCGG UG AUCUUUGGUAUU  AGCU UAGA            G
                   UAAGGGUC AC UGGAGACCAUGA  UCGA AUCU            U
CGUCGUCGCCAUCGUUCGU^       A  C            UU    A    UCUAUGGUAUAG 
130       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	Fe	Fe	To	To	To

Mature sequence

Aae-Mir-9-P11_5p

mirBase accession

MIMAT0014212

Sequence

0- UCUUUGGUAUUCUAGCUGUAGA -22

Get sequence

Star sequence

Aae-Mir-9-P11_3p*

mirBase accession

MIMAT0014213

Sequence

50- UAAAGCUUUAGUACCAGAGGUC -72

Get sequence