MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-9-P11

Family name MIR-9 (all species)
Seed CUUUGGU
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-9c
Paralogues Aae-Mir-9-P10a  Aae-Mir-9-P10b  Aae-Mir-9-P12-v1  Aae-Mir-9-P12-v2  Aae-Mir-9-P13 
Orthologues Aga-Mir-9-P11  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P11  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P11  Dgr-Mir-9  Dme-Mir-9-P11  Dmo-Mir-9-P11  Dsi-Mir-9-P11  Dya-Mir-9-P11  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P11  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P11  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Aaeg_L3)		 supercont1.785: 186231-186302 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P11)		 Mir-9-P11 supercont1.785: 186231-186302 [+] Ensembl
Mir-306 supercont1.785: 213078-213173 [+] Ensembl
Mir-9-P12-v1 supercont1.785: 213277-213338 [+] Ensembl
Mir-9-P12-v2 supercont1.785: 213278-213337 [+] Ensembl
Mir-9-P13 supercont1.785: 213584-213648 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAUCCGUAUCCGUAUGAUUUCCGGCUGAAUCUUUGGUAUUCUAGCUGUAGAAUGUUGAGCUUUGUGAUAUGGUAUCUUCUAAAGCUUUAGUACCAGAGGUCCAACUGGGAAUUGCUUGCUACCGCUGCUGC
Get precursor sequence
Structure
        10          20        30        40        50        60     
GUAUCCGUAUCCGUAUG--|       C  A            CU    G    AUGUUGAGCUUU 
                   AUUUCCGG UG AUCUUUGGUAUU  AGCU UAGA            G
                   UAAGGGUC AC UGGAGACCAUGA  UCGA AUCU            U
CGUCGUCGCCAUCGUUCGU^       A  C            UU    A    UCUAUGGUAUAG 
130       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So To To To
Mature sequence

Aae-Mir-9-P11_5p
mirBase accessionMIMAT0014212
Sequence 
0- UCUUUGGUAUUCUAGCUGUAGA -22
Get sequence
Star sequence

Aae-Mir-9-P11_3p*
mirBase accessionMIMAT0014213
Sequence 
50- UAAAGCUUUAGUACCAGAGGUC -72
Get sequence