MirGeneDB ID | Bge-Mir-9-P11 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
Bge-Mir-9-P10
Bge-Mir-9-P12-v1
Bge-Mir-9-P12-v2
Bge-Mir-9-P13
|
Orthologues |
Aae-Mir-9-P11
Aga-Mir-9-P11
Agr-Mir-9
Bfl-Mir-9
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cte-Mir-9
Dan-Mir-9-P11
Dgr-Mir-9
Dme-Mir-9-P11
Dmo-Mir-9-P11
Dsi-Mir-9-P11
Dya-Mir-9-P11
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gpa-Mir-9-P11
Gsa-Mir-9
Gsp-Mir-9
Hme-Mir-9-P11
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Llo-Mir-9
Mom-Mir-9
Npo-Mir-9
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pdu-Mir-9
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sma-Mir-9
Snu-Mir-9
Spu-Mir-9
War-Mir-9
Xbo-Mir-9
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Bilateria
|
Genome context (Bger_2.0) |
KZ614731.1: 672851-672910 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCACAACAGCAUUGGAGAACUGUGGUCCUGUCUUUGGUAUCCUAGCUGUAGGUUGUAUUAGCUGCUCCUAAAGCUAUUGUACCAAAGUAAGGAACAGUGUUCCAGUCUUCUCAGCCGGCG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCACAACAGCAUUGGAGA----| GG GU CC G UUGUAU
ACUGU UCCU CUUUGGUAU UAGCU UAGG U
UGACA AGGA GAAACCAUG AUCGA AUCC A
GCGGCCGACUCUUCUGACCUUG^ -- AU UU A UCGUCG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
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Mature sequence |
Bge-Mir-9-P11_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUAUCCUAGCUGUAGG -22
Get sequence
|
Star sequence |
Bge-Mir-9-P11_3p* |
mirBase accession | None |
Sequence |
38- UAAAGCUAUUGUACCAAAGUAA -60
Get sequence
|