MirGeneDB ID | Dsi-Mir-9-P11 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Fruit fly (Drosophila simulans) |
MiRBase ID |
|
Paralogues |
Dsi-Mir-9-P9
Dsi-Mir-9-P10
Dsi-Mir-9-P12-v1
Dsi-Mir-9-P12-v2
Dsi-Mir-9-P13
|
Orthologues |
Aae-Mir-9-P11
Aga-Mir-9-P11
Agr-Mir-9
Bfl-Mir-9
Bge-Mir-9-P11
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cte-Mir-9
Dan-Mir-9-P11
Dgr-Mir-9
Dme-Mir-9-P11
Dmo-Mir-9-P11
Dya-Mir-9-P11
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gpa-Mir-9-P11
Gsa-Mir-9
Gsp-Mir-9
Hme-Mir-9-P11
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Llo-Mir-9
Mom-Mir-9
Npo-Mir-9
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pdu-Mir-9
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sma-Mir-9
Snu-Mir-9
Spu-Mir-9
War-Mir-9
Xbo-Mir-9
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Bilateria
|
Genome context (Drosophila_simulans.ASM75419v3.dna.toplevel) |
2L: 16225666-16225735 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUCUUGCACUAUUUAUCAUUUUUGCUGUUUCUUUGGUAUUCUAGCUGUAGAUUGUUUCACGCACAUUGUAUAUCAUCUAAAGCUUUUAUACCAAAGCUCCAGCUUAAAUUGCUUAACAACGCACCAACC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCUCUUGCACUAUUUAUC--| UU UUU UCU G UUGUUUCACGC
AUUU GCUG CUUUGGUAU AGCU UAGA A
UAAA CGAC GAAACCAUA UCGA AUCU C
CCAACCACGCAACAAUUCGU^ UU CUC UUU A ACUAUAUGUUA
. 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dsi-Mir-9-P11_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUAUUCUAGCUGUAGA -22
Get sequence
|
Star sequence |
Dsi-Mir-9-P11_3p* |
mirBase accession | None |
Sequence |
48- UAAAGCUUUUAUACCAAAGCUC -70
Get sequence
|