MirGeneDB 3.0
MirGeneDB ID

Dsi-Mir-9-P13

Family name MIR-9 (all species)
Seed CUUUGGU
Species Fruit fly (Drosophila simulans)
MiRBase ID
Paralogues Dsi-Mir-9-P9  Dsi-Mir-9-P10  Dsi-Mir-9-P11  Dsi-Mir-9-P12-v1  Dsi-Mir-9-P12-v2 
Orthologues Aae-Mir-9-P13  Aga-Mir-9-P13  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P13  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P13  Dgr-Mir-9  Dlo-Mir-9-P13  Dme-Mir-9-P13  Dmo-Mir-9-P13  Dya-Mir-9-P13  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P13  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 2L: 16226513-16226573 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUUUCUCUUUUGUUUGCAUAUUAUUUGCUCUUUGGUGAUUUUAGCUGUAUGGUGUAUAAGUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUUUCUGCAUUAUGCUUGAGUUGAU
Get precursor sequence
Structure
        10        20          30        40        50        60
AUGUUUCUCUUUUGUUUGCAU--|       CUC         UUU    G    GUGUAU 
                       AUUAUUUG   UUUGGUGAU   AGCU UAUG      A
                       UGGUAAAC   AAACCAUUA   UCGA AUAC      A
UAGUUGAGUUCGUAUUACGUCUU^       CAA         UU-    G    CUUAUG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-9-P13_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUGAUUUUAGCUGUAUG -23
Get sequence
Star sequence

Dsi-Mir-9-P13_3p*
mirBase accessionNone
Sequence 
39- UAGAGCUUUAUUACCAAAAACC -61
Get sequence