Mir-9-P13

MirGeneDB ID

Dya-Mir-9-P13

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-9b

Paralogues

Dya-Mir-9-P9 Dya-Mir-9-P10 Dya-Mir-9-P11 Dya-Mir-9-P12-v1 Dya-Mir-9-P12-v2

Orthologues

Aae-Mir-9-P13 Aga-Mir-9-P13 Agr-Mir-9 Bfl-Mir-9 Bge-Mir-9-P13 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P13 Dgr-Mir-9 Dlo-Mir-9-P13 Dme-Mir-9-P13 Dmo-Mir-9-P13 Dsi-Mir-9-P13 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gpa-Mir-9-P13 Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2R: 4404254-4404316 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P13)

Mir-9-P13 2R: 4404254-4404316 [-] UCSC Ensembl
Mir-9-P12-v1 2R: 4404435-4404497 [-] UCSC Ensembl
Mir-9-P12-v2 2R: 4404435-4404497 [-] UCSC Ensembl
Mir-9-P11 2R: 4405087-4405156 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGUUGCUCUUUUGUUUGCAUAUUAUUUGCUCUUUGGUGAUUUUAGCUGUAUGGUGUGUUUAUGUGUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUUUCUGCAUUAUGCUUGAGUUGAU

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Structure

        10        20          30        40        50        60 
CGGUUGCUCUUUUGUUUGCAU--|       CUC         UUU    G    GUGUGUU 
                       AUUAUUUG   UUUGGUGAU   AGCU UAUG       U
                       UGGUAAAC   AAACCAUUA   UCGA AUAC       A
UAGUUGAGUUCGUAUUACGUCUU^       CAA         UU-    G    CUUGUGU 
 120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

He	Wh

Mature sequence

Dya-Mir-9-P13_5p

mirBase accession

MIMAT0009113

Sequence

0- UCUUUGGUGAUUUUAGCUGUAUG -23

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Star sequence

Dya-Mir-9-P13_3p*

mirBase accession

None

Sequence

41- UAGAGCUUUAUUACCAAAAACC -63

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