MirGeneDB 3.0

MirGeneDB ID

Aae-Mir-9-P13

Family name MIR-9 (all species)
Seed CUUUGGU
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-9b
Paralogues Aae-Mir-9-P10a  Aae-Mir-9-P10b  Aae-Mir-9-P11  Aae-Mir-9-P12-v1  Aae-Mir-9-P12-v2 
Orthologues Aga-Mir-9-P13  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P13  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P13  Dgr-Mir-9  Dlo-Mir-9-P13  Dme-Mir-9-P13  Dmo-Mir-9-P13  Dsi-Mir-9-P13  Dya-Mir-9-P13  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P13  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Aaeg_L3)
supercont1.785: 213584-213648 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P13)
Mir-9-P11 supercont1.785: 186231-186302 [+] Ensembl
Mir-306 supercont1.785: 213078-213173 [+] Ensembl
Mir-9-P12-v1 supercont1.785: 213277-213338 [+] Ensembl
Mir-9-P12-v2 supercont1.785: 213278-213337 [+] Ensembl
Mir-9-P13 supercont1.785: 213584-213648 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AACCGCCUGCCUUUUAUCACGUUUAUUGGAUCUUUGGUGAUUUUAGCUGUAUGCUGAUACGUUUCUGAUUGCAUAUAGCUUUAUCACCAAAAACCUAAUGAAUGGUGACUUUUGAGUUUCGCCUU
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Structure
        10          20        30        40        50        60  
AACCGCCUGCCUUUUAUCA--|         AUC         UUU          UGAUACG 
                     CGUUUAUUGG   UUUGGUGAU   AGCUGUAUGC       U
                     GUAAGUAAUC   AAACCACUA   UCGAUAUACG       U
UUCCGCUUUGAGUUUUCAGUG^         CAA         UU-          UUAGUCU 
   120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ge Ge So So To To To
Mature sequence

Aae-Mir-9-P13_5p

mirBase accessionMIMAT0014324
Sequence
0- UCUUUGGUGAUUUUAGCUGUAUGC -24
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Star sequence

Aae-Mir-9-P13_3p*

mirBase accessionNone
Sequence
43- UAUAGCUUUAUCACCAAAAACC -65
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