MirGeneDB ID | Gpa-Mir-9-P13 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
|
Paralogues |
Gpa-Mir-9-P10
Gpa-Mir-9-P11
Gpa-Mir-9-P12-v1
Gpa-Mir-9-P12-v2
|
Orthologues |
Aae-Mir-9-P13
Aga-Mir-9-P13
Agr-Mir-9
Bfl-Mir-9
Bge-Mir-9-P13
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cte-Mir-9
Dan-Mir-9-P13
Dgr-Mir-9
Dlo-Mir-9-P13
Dme-Mir-9-P13
Dmo-Mir-9-P13
Dsi-Mir-9-P13
Dya-Mir-9-P13
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gsa-Mir-9
Gsp-Mir-9
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Llo-Mir-9
Mom-Mir-9
Npo-Mir-9
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pdu-Mir-9
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sma-Mir-9
Snu-Mir-9
Spu-Mir-9
War-Mir-9
Xbo-Mir-9
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Bilateria
|
Genome context (GpalI1) |
Scaffold60: 382083-382145 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUGUUUUAUUUAUUUUGCAUGUUAUUUGCUCUUUGGUGAUUUUAGCUGUAUGAUUUACAAUUAUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGAUUUUUGCUUUAUUUCCAUGUAUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUGUUUUAUUUAUUUUGCAU--| CUC UUU G AUUUACA
GUUAUUUG UUUGGUGAU AGCU UAUG A
UAGUAAAC AAACCAUUA UCGA AUAC U
ACUAUGUACCUUUAUUUCGUUUU^ CAA UU- G CUUAUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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Mature sequence |
Gpa-Mir-9-P13_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUGAUUUUAGCUGUAUG -23
Get sequence
|
Star sequence |
Gpa-Mir-9-P13_3p* |
mirBase accession | None |
Sequence |
41- UAGAGCUUUAUUACCAAAAACC -63
Get sequence
|