MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-9-P13

Family name MIR-9 (all species)
Seed CUUUGGU
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-9b
Paralogues Aga-Mir-9-P10  Aga-Mir-9-P11  Aga-Mir-9-P12 
Orthologues Aae-Mir-9-P13  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P13  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P13  Dgr-Mir-9  Dlo-Mir-9-P13  Dme-Mir-9-P13  Dmo-Mir-9-P13  Dsi-Mir-9-P13  Dya-Mir-9-P13  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P13  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064602.1: 5874685-5874750 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P13)
Mir-9-P13 NC_064602.1: 5874685-5874750 [-] Ensembl
Mir-9-P12 NC_064602.1: 5875198-5875261 [-] Ensembl
Mir-306 NC_064602.1: 5875483-5875544 [-] Ensembl
Mir-9-P11 NC_064602.1: 5878052-5878119 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUAUAUCGUCCGUUGUUGCCACUUAUUGGGACUUUGGUGAUUUUAGCUGUAUGUUGAAUGCAUUCCUAACCACAUAUAGCUUUAUCACCAAAAACCUAAUGUGUGUGUACGUUUUAAGUUUGUUUU
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Structure
        10          20        30        40        50        60   
CUAUAUCGUCCGUUGUU-  -|  U       AC         UUU         UUGAAUGCA 
                  GC CAC UAUUGGG  UUUGGUGAU   AGCUGUAUG         \
                  UG GUG GUAAUCC  AAACCACUA   UCGAUAUAC         U
UUUUGUUUGAAUUUUGCA  U^  U       AA         UU-         ACCAAUCCU 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Mature sequence

Aga-Mir-9-P13_5p

mirBase accessionMIMAT0001529
Sequence
0- ACUUUGGUGAUUUUAGCUGUAUG -23
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Star sequence

Aga-Mir-9-P13_3p*

mirBase accessionNone
Sequence
44- UAUAGCUUUAUCACCAAAAACC -66
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