MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-306

Family name MIR-306 (all species)
Seed CAGGUAC
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-306
Paralogues
Orthologues Aae-Mir-306  Bge-Mir-306  Dan-Mir-306  Dlo-Mir-306  Dme-Mir-306  Dmo-Mir-306  Dsi-Mir-306  Dya-Mir-306  Gpa-Mir-306  Hme-Mir-306 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064602.1: 5875483-5875544 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-306)
Mir-9-P13 NC_064602.1: 5874685-5874750 [-] Ensembl
Mir-9-P12 NC_064602.1: 5875198-5875261 [-] Ensembl
Mir-306 NC_064602.1: 5875483-5875544 [-] Ensembl
Mir-9-P11 NC_064602.1: 5878052-5878119 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUGCUUCUUCUGCGUCCUUUUCACAUGGUCAGGUACUGGAUGACUCUCAGUUGUGUGUAAAAGAUGCUGAGGGCCUUCUGGUACCUACCCCAGUGAGGACGCCAUUCGACCAACUUCCUC
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Structure
        10          20         30        40        50        60
UAAUGCUUCUUCUGCGUCC--       AU-|  C      UG  UGA       UUGUGUG 
                     UUUUCAC   GGU AGGUAC  GA   CUCUCAG       U
                     AGGAGUG   CCA UCCAUG  CU   GGGAGUC       A
CUCCUUCAACCAGCUUACCGC       ACC^  -      GU  UCC       GUAGAAA 
120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Mature sequence

Aga-Mir-306_5p

mirBase accessionMIMAT0005530
Sequence
0- UCAGGUACUGGAUGACUCUCAG -22
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Star sequence

Aga-Mir-306_3p* (predicted)

mirBase accessionNone
Sequence
40- GAGGGCCUUCUGGUACCUACCC -62
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