Mir-9-P12-v1

MirGeneDB ID

Aae-Mir-9-P12-v1

Family name

MIR-9 (all species)

Seed

AAAGCUA

Species

Yellow fever mosquito (Aedes aegypti)

MiRBase ID

aae-mir-79

Paralogues

Aae-Mir-9-P10a Aae-Mir-9-P10b Aae-Mir-9-P11 Aae-Mir-9-P12-v2 Aae-Mir-9-P13

Orthologues

Aga-Mir-9-P12 Agr-Mir-9 Bfl-Mir-9 Bge-Mir-9-P12-v1 Bge-Mir-9-P12-v2 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P12-v1 Dan-Mir-9-P12-v2 Dgr-Mir-9 Dlo-Mir-9-P12-v1 Dlo-Mir-9-P12-v2 Dme-Mir-9-P12-v1 Dme-Mir-9-P12-v2 Dmo-Mir-9-P12-v1 Dmo-Mir-9-P12-v2 Dsi-Mir-9-P12-v1 Dsi-Mir-9-P12-v2 Dya-Mir-9-P12-v1 Dya-Mir-9-P12-v2 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gpa-Mir-9-P12-v1 Gpa-Mir-9-P12-v2 Gsa-Mir-9 Gsp-Mir-9 Hme-Mir-9-P12 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 Tca-Mir-9-P12 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Aaeg_L3)

supercont1.785: 213277-213338 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P12-v1)

Mir-9-P11 supercont1.785: 186231-186302 [+] Ensembl
Mir-306 supercont1.785: 213078-213173 [+] Ensembl
Mir-9-P12-v1 supercont1.785: 213277-213338 [+] Ensembl
Mir-9-P12-v2 supercont1.785: 213278-213337 [+] Ensembl
Mir-9-P13 supercont1.785: 213584-213648 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CAGAAUGAGAAAACGGAACCCAUCGUCCAUGCUUUGGCGCUUUAGCUGUAUGAUAGAAUUUAAUAUUUCAUAAAGCUAGAUUACCAAAGCAUGGAAGGCUUGGGCGGUGUCGUCCCUCUAAC

Get precursor sequence

Structure

        10        20          30        40        50        60
CAGAAUGAGAAAACGGAA    UCG--|           CGC       G    AUAGAAU 
                  CCCA     UCCAUGCUUUGG   UUUAGCU UAUG       U
                  GGGU     AGGUACGAAACC   AGAUCGA AUAC       U
CAAUCUCCCUGCUGUGGC    UCGGA^           AUU       A    UUUAUAA 
120       110       100        90        80        70