MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-9-P11

Family name MIR-9 (all species)
Seed CUUUGGU
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-9a
Paralogues Hme-Mir-9-P9  Hme-Mir-9-P10  Hme-Mir-9-P12 
Orthologues Aae-Mir-9-P11  Aga-Mir-9-P11  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P11  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P11  Dgr-Mir-9  Dme-Mir-9-P11  Dmo-Mir-9-P11  Dsi-Mir-9-P11  Dya-Mir-9-P11  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P11  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Hmel_1)		 HE669612: 10319-10377 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P11)		 Mir-9-P12 HE669612: 9693-9752 [-] Ensembl
Mir-306 HE669612: 9837-9892 [-] Ensembl
Mir-9-P11 HE669612: 10319-10377 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AACCGCACGCCGCGUCCGGCGCGGCUCGUCUCUUUGGUAUCCUAGCUGUAGGCGUGUCCUCGUACCCUAAAGUUAUGGUACCGAAGUUACGAGCCGUACCGCGCCUCCACCGAGCGCGG
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Structure
        10          20        30        40        50         
AACCGCACGCCGCGUCC--| CG        CU          C     G    CGUGUC 
                   GG  CGGCUCGU  CUUUGGUAUC UAGCU UAGG      \
                   CC  GCCGAGCA  GAAGCCAUGG AUUGA AUCC      C
GGCGCGAGCCACCUCCGCG^ AU        UU          U     A    CAUGCU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Fe Fe Fe Fe Ma Ma
Mature sequence

Hme-Mir-9-P11_5p
mirBase accessionMIMAT0025003
Sequence 
0- UCUUUGGUAUCCUAGCUGUAGG -22
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Star sequence

Hme-Mir-9-P11_3p*
mirBase accessionMIMAT0025003
Sequence 
37- UAAAGUUAUGGUACCGAAGUUA -59
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