MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-9-P11

Family name MIR-9 (all species)
Seed CUUUGGU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-9c
Paralogues Dme-Mir-9-P9  Dme-Mir-9-P10  Dme-Mir-9-P12-v1  Dme-Mir-9-P12-v2  Dme-Mir-9-P13 
Orthologues Aae-Mir-9-P11  Aga-Mir-9-P11  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P11  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P11  Dgr-Mir-9  Dmo-Mir-9-P11  Dsi-Mir-9-P11  Dya-Mir-9-P11  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P11  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P11  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Drosophila_melanogaster_BDGP6)		 2L: 16697936-16698005 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P11)		 Mir-9-P11 2L: 16697936-16698005 [+] UCSC Ensembl
Mir-306 2L: 16698418-16698476 [+] UCSC Ensembl
Mir-9-P12-v1 2L: 16698572-16698634 [+] UCSC Ensembl
Mir-9-P12-v2 2L: 16698572-16698634 [+] UCSC Ensembl
Mir-9-P13 2L: 16698758-16698820 [+] UCSC Ensembl
Mir-1006 2L: 16724795-16724858 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCUUGCACUAUUUAUCAUUUUUGCUGUUUCUUUGGUAUUCUAGCUGUAGAUUGUUUCACGCACAUUGUAUAUCAUCUAAAGCUUUUAUACCAAAGCUCCAGCUUAAAUUGCUUAACAUGAUAUUUCAC
Get precursor sequence
Structure
        10          20        30        40        50        60    
CCUCUUGCACUAUUUAUC--|   UU    UUU         UCU    G    UUGUUUCACGC 
                    AUUU  GCUG   CUUUGGUAU   AGCU UAGA           A
                    UAAA  CGAC   GAAACCAUA   UCGA AUCU           C
CACUUUAUAGUACAAUUCGU^   UU    CUC         UUU    A    ACUAUAUGUUA 
.       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-9-P11_5p
mirBase accessionMIMAT0000392
Sequence 
0- UCUUUGGUAUUCUAGCUGUAGA -22
Get sequence
Proposed targets microrna.org: MIMAT0000392
TargetScanFly: dme-miR-9c
Star sequence

Dme-Mir-9-P11_3p*
mirBase accessionMIMAT0020828
Sequence 
48- UAAAGCUUUUAUACCAAAGCUC -70
Get sequence