MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-1006

Family name MIR-1006 (all species)
Seed AAAUUCG
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-1006
Paralogues
Orthologues Dan-Mir-1006  Dmo-Mir-1006  Dsi-Mir-1006  Dya-Mir-1006 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_melanogaster_BDGP6)		 2L: 16724795-16724858 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1006)		 Mir-9-P11 2L: 16697936-16698005 [+] UCSC Ensembl
Mir-306 2L: 16698418-16698476 [+] UCSC Ensembl
Mir-9-P12-v1 2L: 16698572-16698634 [+] UCSC Ensembl
Mir-9-P12-v2 2L: 16698572-16698634 [+] UCSC Ensembl
Mir-9-P13 2L: 16698758-16698820 [+] UCSC Ensembl
Mir-1006 2L: 16724795-16724858 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUAUCUUGUCGACCCGUGUCAACUUCCAGGUGAGUUUGAAAUUGAAAUGCGUAAAUUGUUUGGUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGUUGAUCUUUUGCCUGUGG
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Structure
        10                20        30        40        50        60 
CGUAUCUUGUCGACCCG--------|  CA    CCAG      UU         AUGCGUAAAUUGU 
                         UGU  ACUU    GUGAGU  GAAAUUGAA             U
                         ACG  UGGA    UACUUA  CUUUAGCUU             U
GGUGUCCGUUUUCUAGUUGACCAUA^  --    ----      UU         AAAUUUAACAUGG 
  120       110       100              90        80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-1006_5p*
mirBase accessionMIMAT0020903
Sequence 
0- GUGAGUUUGAAAUUGAAAUGCGUAAA -26
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Mature sequence

Dme-Mir-1006_3p
mirBase accessionMIMAT0005019
Sequence 
41- UAAAUUCGAUUUCUUAUUCAUAG -64
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Proposed targets microrna.org: MIMAT0005019
TargetScanFly: dme-miR-1006