| MirGeneDB ID | Dan-Mir-1006 |
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| Family name |
MIR-1006 (all species) |
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| Seed |
AAAUUCG |
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| Species |
Fruit fly (Drosophila ananassae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Dme-Mir-1006
Dmo-Mir-1006
Dsi-Mir-1006
Dya-Mir-1006
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| Node of Origin (locus) |
Drosophila
|
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| Node of Origin (family) |
Drosophila
|
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Genome context
(Dana_caf1) |
scaffold_12943: 3938340-3938403 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGCAUCCUGUCGACCCGUGUCAACUUCCAGGUGAGUUUGAAAUUGAAAUGCGUAAAUUGUUUGGUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUCCAAUACCAGCUGAUCUUCUGCCUGUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGCAUCCUGUCGACCCGUGUCAACUU---| AG UU AUGCGUAAAUUGU
CC GUGAGU GAAAUUGAA U
GG UACUUA CUUUAGCUU U
GGUGUCCGUCUUCUAGUCGACCAUAACCU^ A- UU AAAUUUAACAUGG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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|
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| Star sequence |
Dan-Mir-1006_5p* |
| mirBase accession | None |
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| Sequence |
0- GUGAGUUUGAAAUUGAAAUGCGUAAA -26
Get sequence
|
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| Mature sequence |
Dan-Mir-1006_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UAAAUUCGAUUUCUUAUUCAUAG -64
Get sequence
|
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