MirGeneDB 3.0

MirGeneDB ID

Dsi-Mir-1006

Family name MIR-1006 (all species)
Seed AAAUUCG
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-1006
Paralogues
Orthologues Dan-Mir-1006  Dme-Mir-1006  Dmo-Mir-1006  Dya-Mir-1006 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2L: 16252437-16252500 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUAUCCUGUCGACCCGGGUCAACUUCCAGGUGAGUUUGAAAUUGAAAUGCGUAAAUUGUUUGGUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGUUGAUCUUCUGCUUGUGG
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Structure
        10           20        30        40        50        60 
CGUAUCCUGUCGACCCG---|  CAACUU  AG      UU         AUGCGUAAAUUGU 
                    GGU      CC  GUGAGU  GAAAUUGAA             U
                    CCA      GG  UACUUA  CUUUAGCUU             U
GGUGUUCGUCUUCUAGUUGA^  UAACGU  A-      UU         AAAUUUAACAUGG 
  120       110       100         90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dsi-Mir-1006_5p*

mirBase accessionMIMAT0012443
Sequence
0- GUGAGUUUGAAAUUGAAAUGCGUAAA -26
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Mature sequence

Dsi-Mir-1006_3p

mirBase accessionMIMAT0012444
Sequence
41- UAAAUUCGAUUUCUUAUUCAUAG -64
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