| MirGeneDB ID | Dmo-Mir-1006 |
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| Family name |
MIR-1006 (all species) |
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| Seed |
AAAUUCG |
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| Species |
Fruit fly (Drosophila mojavensis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Dan-Mir-1006
Dme-Mir-1006
Dsi-Mir-1006
Dya-Mir-1006
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| Node of Origin (locus) |
Drosophila
|
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| Node of Origin (family) |
Drosophila
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Genome context
(Dmoj_caf1) |
scaffold_6500: 25691052-25691115 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGCAUCCUGUCGACGCGUGUCAACUUCCAGGUGAGUUUGAAAUUGAAAUGUGUAAAUUGUUUGGUACAAUUUAAAUUCGAUUUCUUAUUCAUAGGUGCAAUACCAGUUGAUCUUCUGCCUGUGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CGCAUCCUGUCGACGCG--------| CA CCAG UU AUGUGUAAAUUGU
UGU ACUU GUGAGU GAAAUUGAA U
ACG UGGA UACUUA CUUUAGCUU U
GGUGUCCGUCUUCUAGUUGACCAUA^ -- ---- UU AAAUUUAACAUGG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Dmo-Mir-1006_5p* |
| mirBase accession | None |
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| Sequence |
0- GUGAGUUUGAAAUUGAAAUGUGUAAA -26
Get sequence
|
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| Mature sequence |
Dmo-Mir-1006_3p |
| mirBase accession | None |
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| Sequence |
41- UAAAUUCGAUUUCUUAUUCAUAG -64
Get sequence
|
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