Mir-2-P3-v1

MirGeneDB ID

Tca-Mir-2-P3-v1

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-2-1

Paralogues

Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2 Tca-Mir-2-P2a Tca-Mir-2-P2b Tca-Mir-2-P3-v2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2 Tca-Mir-2-P5c Tca-Mir-2-P5d Tca-Mir-2-P5e Tca-Mir-2-P7 Tca-Mir-2-P8

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gsp-Mir-2 Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Ple-Mir-2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Tcas5.2)

LG3: 561200-561258 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3-v1)

Mir-3842 LG3: 559294-559352 [+] Ensembl
Mir-71 LG3: 560714-560776 [+] Ensembl
Mir-2-P1-v1 LG3: 560832-560890 [+] Ensembl
Mir-2-P1-v2 LG3: 560833-560889 [+] Ensembl
Mir-2-P2a LG3: 560954-561011 [+] Ensembl
Mir-2-P2b LG3: 561066-561124 [+] Ensembl
Mir-2-P3-v2 LG3: 561198-561260 [+] Ensembl
Mir-2-P3-v1 LG3: 561200-561258 [+] Ensembl
Mir-2-P4-v2 LG3: 561348-561412 [+] Ensembl
Mir-2-P4-v1 LG3: 561350-561410 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUUUUUGUUCGAUUUUUAUGUGCUGUGUCGCUCAUCAACUGGAUGUGAAAUGGAUUUGUAGCUCAUAUCACAGCCAGCUUUGAUGAGCGCUACAACAUCUAAUAGACACCAUUUUCACA

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Structure

        10          20        30          40        50        
AUUUUUGUUCGAUUUUUAU--   C    U          --|   A     A   GAUUU 
                     GUG UGUG CGCUCAUCAA  CUGG UGUGA AUG     \
                     UAC ACAU GCGAGUAGUU  GACC ACACU UAC     G
ACACUUUUACCACAGAUAAUC   A    C          UC^   G     A   UCGAU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-2-P3-v1_5p*

mirBase accession

MIMAT0019094

Sequence

0- CUCAUCAACUGGAUGUGAAAUG -22

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Mature sequence

Tca-Mir-2-P3-v1_3p

mirBase accession

MIMAT0008353

Sequence

35- UAUCACAGCCAGCUUUGAUGAGCG -59

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