MirGeneDB ID | Dan-Mir-2-P3a-v1 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
Dan-Mir-2-P1-v1
Dan-Mir-2-P1-v2
Dan-Mir-2-P2a
Dan-Mir-2-P2b1
Dan-Mir-2-P2b2
Dan-Mir-2-P3a-v2
Dan-Mir-2-P3b
Dan-Mir-2-P4a-v1
Dan-Mir-2-P4a-v2
Dan-Mir-2-P4b-v1
Dan-Mir-2-P4b-v2
Dan-Mir-2-P5
Dan-Mir-2-P6a
Dan-Mir-2-P6b
Dan-Mir-2-P6c
Dan-Mir-2-P7
Dan-Mir-2-P8
Dan-Mir-2-P9
|
Orthologues |
Aae-Mir-2-P3
Aga-Mir-2-P3
Bge-Mir-2-P3-v1
Bge-Mir-2-P3-v2
Cbr-Mir-2-o3
Cel-Mir-2-o3
Dlo-Mir-2-P3-v1
Dlo-Mir-2-P3-v2
Dma-Mir-2-P3
Dme-Mir-2-P3a
Dpu-Mir-2-P3
Dsi-Mir-2-P3a
Dya-Mir-2-P3a
Gpa-Mir-2-P3a
Gsp-Mir-2
Hme-Mir-2-P3-v1
Hme-Mir-2-P3-v2
Isc-Mir-2-P3
Ple-Mir-2
Tca-Mir-2-P3-v1
Tca-Mir-2-P3-v2
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
|
Node of Origin (family) |
Protostomia
|
Genome context (Dana_caf1) |
scaffold_12916: 6006068-6006130 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAUACAGAUUUUUUUAGGGAACUGCGACCCUCCUUAAAGUGGCGGUGACAUGUAGCUUUCAUAUUCAUAUCACAGCUUUGCUUUCAGGAGCGUUGAGGUUUCUCGAAGCCAUCAAUAGUGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAUACAGAUUUUUUUA-- G C U --| G C UAGCUU
GGGAACU CGAC CUCCU AAAGU GGC GUGA AUG \
UCUUUGG GUUG GAGGA UUUCG UCG CACU UAC U
AAGUGAUAACUACCGAAGC A C C UU^ A A UUAUAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dan-Mir-2-P3a-v1_5p* |
mirBase accession | None |
Sequence |
0- CUCCUUAAAGUGGCGGUGACAUG -23
Get sequence
|
Mature sequence |
Dan-Mir-2-P3a-v1_3p |
mirBase accession | None |
Sequence |
38- UAUCACAGCUUUGCUUUCAGGAGCG -63
Get sequence
|