Mir-2-P3a

MirGeneDB ID

Dya-Mir-2-P3a

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-2b-1

Paralogues

Dya-Mir-2-P1-v1 Dya-Mir-2-P1-v2 Dya-Mir-2-P2a Dya-Mir-2-P2b1 Dya-Mir-2-P2b2 Dya-Mir-2-P3b Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Dya-Mir-2-P5 Dya-Mir-2-P6a Dya-Mir-2-P6b Dya-Mir-2-P6c Dya-Mir-2-P7 Dya-Mir-2-P8 Dya-Mir-2-P9-v1 Dya-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Cbr-Mir-2-o3 Cel-Mir-2-o3 Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dma-Mir-2-P3 Dme-Mir-2-P3a Dpu-Mir-2-P3 Dsi-Mir-2-P3a Gpa-Mir-2-P3a Gsp-Mir-2 Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Ple-Mir-2 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Glossinidae + Drosophilidae

Node of Origin (family)

Protostomia

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2L: 10894252-10894314 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCAAAUGGAAAAAGUGAAAACUUCAACUGUCUUCAAAGUGGCGGUGACAUGUUGUCAACAAUAUUCAUAUCACAGCCAGCUUUGAGGAGCGUUGCGGUUUUUCUCGCCAACCGACUAAUGA

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Structure

        10          20        30        40         50        60
GUGCAAAUGGAAAAAGU--       U    UG         -|   G    C   UUGUCA 
                   GAAAACU CAAC  UCUUCAAAG UGGC GUGA AUG      A
                   UUUUUGG GUUG  AGGAGUUUC ACCG CACU UAC      C
AGUAAUCAGCCAACCGCUC       C    CG         G^   A    A   UUAUAA 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dya-Mir-2-P3a_5p*

mirBase accession

None

Sequence

0- GUCUUCAAAGUGGCGGUGACAUG -23

Get sequence

Mature sequence

Dya-Mir-2-P3a_3p

mirBase accession

MIMAT0009075

Sequence

39- UAUCACAGCCAGCUUUGAGGAGCG -63

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