Mir-2-P3-v1

MirGeneDB ID

Hme-Mir-2-P3-v1

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Longwing butterfly (Heliconius melpomene)

MiRBase ID

hme-mir-2b

Paralogues

Hme-Mir-2-P1-v1 Hme-Mir-2-P1-v2 Hme-Mir-2-P2a Hme-Mir-2-P2b Hme-Mir-2-P3-v2 Hme-Mir-2-P4 Hme-Mir-2-P7 Hme-Mir-2-P8

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gsp-Mir-2 Isc-Mir-2-P3 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Ple-Mir-2 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Hmel_1)

HE671256: 344898-344954 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3-v1)

Mir-71 HE671256: 336024-336085 [+] Ensembl
Mir-2-P1-v2 HE671256: 344481-344540 [+] Ensembl
Mir-2-P1-v1 HE671256: 344483-344538 [+] Ensembl
Mir-2-P2a HE671256: 344637-344695 [+] Ensembl
Mir-2-P2b HE671256: 344775-344830 [+] Ensembl
Mir-2-P3-v2 HE671256: 344897-344955 [+] Ensembl
Mir-2-P3-v1 HE671256: 344898-344954 [+] Ensembl
Mir-2-P4 HE671256: 345032-345089 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CGGUAUAGUCAUCGGGCAGGUCGAGUGUCACUCACGAAGUGGUUGUAGUAUGUCUCCAGUCCAUAUCACAGCCAGCUUUGAUGAGCGACAAUUGGCGAACUGGCGACUGCUGCGCGA

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Structure

        10          20        30          40        50       
CGGUAUAGUCAUCGGGCAG--     G    A    -     -|      A     UCUC 
                     GUCGA UGUC CUCA CGAAG UGGUUGU GUAUG    \
                     CGGUU ACAG GAGU GUUUC ACCGACA UAUAC    C
AGCGCGUCGUCAGCGGUCAAG     A    C    A     G^      C     CUGA 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Fe	Fe	Fe	Fe	Ma	Ma

Star sequence

Hme-Mir-2-P3-v1_5p*

mirBase accession

None

Sequence

0- CUCACGAAGUGGUUGUAGUAUG -22

Get sequence

Mature sequence

Hme-Mir-2-P3-v1_3p

mirBase accession

MIMAT0024972

Sequence

33- UAUCACAGCCAGCUUUGAUGAGCG -57

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