MirGeneDB ID | Bge-Mir-2-P3-v1 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
Bge-Mir-2-P1-v1
Bge-Mir-2-P1-v2
Bge-Mir-2-P2a
Bge-Mir-2-P2b
Bge-Mir-2-P3-v2
Bge-Mir-2-P4-v1
Bge-Mir-2-P4-v2
Bge-Mir-2-P7
|
Orthologues |
Aae-Mir-2-P3
Aga-Mir-2-P3
Cbr-Mir-2-o3
Cel-Mir-2-o3
Csc-Mir-2-P3n
Csc-Mir-2-P3o
Dan-Mir-2-P3a-v1
Dan-Mir-2-P3a-v2
Dan-Mir-2-P3b
Dlo-Mir-2-P3-v1
Dlo-Mir-2-P3-v2
Dma-Mir-2-P3
Dme-Mir-2-P3a
Dme-Mir-2-P3b
Dmo-Mir-2-P3b
Dpu-Mir-2-P3
Dsi-Mir-2-P3a
Dsi-Mir-2-P3b
Dya-Mir-2-P3a
Dya-Mir-2-P3b
Gpa-Mir-2-P3a
Gpa-Mir-2-P3b
Gsp-Mir-2
Hme-Mir-2-P3-v1
Hme-Mir-2-P3-v2
Isc-Mir-2-P3
Lpo-Mir-2-P3g
Lpo-Mir-2-P3h
Lpo-Mir-2-P3i
Lpo-Mir-2-P3k
Lpo-Mir-2-P3l
Lpo-Mir-2-P3m
Ple-Mir-2
Tca-Mir-2-P3-v1
Tca-Mir-2-P3-v2
|
Node of Origin (locus) |
Arthropoda
|
Node of Origin (family) |
Protostomia
|
Genome context (Bger_2.0) |
KZ615436.1: 353745-353804 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAACCAAACAUAAACUGCUUGGUGUGCUGCUCACAAAGCUGUUGUGAUGUGUCGAUUUGAGUUCAUAUCACAGCCAGCUUUGAUGAGCGGCACACUAAGAUGAACUACAGAACUUCAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAACCAAACAUAAACUG-- - -| UCGAU
CUUGGUGUGCUGCUCA CAAAGCU GUUGUGAUGUG U
GAAUCACACGGCGAGU GUUUCGA CGACACUAUAC U
CAACUUCAAGACAUCAAGUA A C^ UUGAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Bge-Mir-2-P3-v1_5p* |
mirBase accession | None |
Sequence |
0- CUCACAAAGCUGUUGUGAUGUG -22
Get sequence
|
Mature sequence |
Bge-Mir-2-P3-v1_3p |
mirBase accession | None |
Sequence |
36- UAUCACAGCCAGCUUUGAUGAGCG -60
Get sequence
|