MirGeneDB ID | Bge-Mir-2-P2a |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
Bge-Mir-2-P1-v1
Bge-Mir-2-P1-v2
Bge-Mir-2-P2b
Bge-Mir-2-P3-v1
Bge-Mir-2-P3-v2
Bge-Mir-2-P4-v1
Bge-Mir-2-P4-v2
Bge-Mir-2-P7
|
Orthologues |
Aga-Mir-2-P2a
Dan-Mir-2-P2a
Dlo-Mir-2-P2a
Dma-Mir-2-o2
Dma-Mir-2-P2
Dme-Mir-2-P2a
Dmo-Mir-2-P2a
Dpu-Mir-2-o2
Dpu-Mir-2-P2
Dsi-Mir-2-P2a
Dya-Mir-2-P2a
Gpa-Mir-2-P2a
Gsp-Mir-2
Hme-Mir-2-P2a
Ple-Mir-2
Tca-Mir-2-P2a
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Protostomia
|
Genome context (Bger_2.0) |
KZ615136.1: 496274-496334 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUUUCCAAUAACAUUCCGUUGCACUGGUCGUCAAUUUGGUUGUGAAAUGUUGUAUUAAAAAUUCAUAUCACAGCCACUUUGAUGAGCUAGUUUUUCGGACCAUUCACCUGGAGAUCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCUUUCCAAUAACAU-- UUGC -| UU A UUGUAU
UCCG ACUGG UCGUCAA UGGUUGUGA AUG U
AGGC UGAUC AGUAGUU ACCGACACU UAC A
GUCUAGAGGUCCACUUACC UUUU G^ UC A UUAAAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
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Star sequence |
Bge-Mir-2-P2a_5p* |
mirBase accession | None |
Sequence |
0- UCGUCAAUUUGGUUGUGAAAUG -22
Get sequence
|
Mature sequence |
Bge-Mir-2-P2a_3p |
mirBase accession | None |
Sequence |
38- UAUCACAGCCACUUUGAUGAGCU -61
Get sequence
|