Mir-2-P4-v2

MirGeneDB ID

Bge-Mir-2-P4-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Cockroach (Blattella germanica)

MiRBase ID

Paralogues

Bge-Mir-2-P1-v1 Bge-Mir-2-P1-v2 Bge-Mir-2-P2a Bge-Mir-2-P2b Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P7

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Bger_2.0)

KZ615436.1: 350982-351043 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGAUAGUUCGGAGAUUAUGAUCUCAUUGCCCUCGUCAGAGUGGUUAUGAUGUGUCUAUAUUAAUUUCAUAUCACAGCCAGCUUUGAUGAGCGCAAAGGGAUUCUAAACACCUUUUAAGAAAA

Get precursor sequence

Structure

        10          20        30        40         50          
UGAUAGUUCGGAGAUUAU--      A    C          -|    A     UGUCUAUA 
                    GAUCUC UUGC CUCGUCAGAG UGGUU UGAUG        \
                    UUAGGG AACG GAGUAGUUUC ACCGA ACUAU        U
AAAAGAAUUUUCCACAAAUC      A    C          G^    C     ACUUUAAU 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Co	Co	Di	Di	Eg	Eg	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov

Star sequence

Bge-Mir-2-P4-v2_5p*

mirBase accession

None

Sequence

0- CUCGUCAGAGUGGUUAUGAUG -21

Get sequence

Mature sequence

Bge-Mir-2-P4-v2_3p

mirBase accession

None

Sequence

40- UCACAGCCAGCUUUGAUGAGCG -62

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