Mir-2-P4a-v2

MirGeneDB ID

Dme-Mir-2-P4a-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-2a-1

Paralogues

Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dme-Mir-2-P2a Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dme-Mir-2-P3a Dme-Mir-2-P3b Dme-Mir-2-P4a-v1 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dme-Mir-2-P5 Dme-Mir-2-P6a Dme-Mir-2-P6b Dme-Mir-2-P6c Dme-Mir-2-P7 Dme-Mir-2-P8-v1 Dme-Mir-2-P8-v2 Dme-Mir-2-P9-v1 Dme-Mir-2-P9-v2

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dma-Mir-2-P4 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Glossinidae + Drosophilidae

Node of Origin (family)

Protostomia

Genome context
(Drosophila_melanogaster_BDGP6)

2L: 19569901-19569966 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4a-v2)

Mir-2-P4b-v1 2L: 19569495-19569554 [-] UCSC Ensembl
Mir-2-P4b-v2 2L: 19569495-19569554 [-] UCSC Ensembl
Mir-2-P4a-v1 2L: 19569901-19569966 [-] UCSC Ensembl
Mir-2-P4a-v2 2L: 19569901-19569966 [-] UCSC Ensembl
Mir-2-P3b 2L: 19570188-19570256 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUAAAACUAUAUUGGCGCAUUCAUGCUGGGCUCUCAAAGUGGUUGUGAAAUGCAUUUCCGCUUUGCGCGGCAUAUCACAGCCAGCUUUGAUGAGCUUAGCGUAAUGUAUCGUACAUCAAAUCAUAA

Get precursor sequence

Structure

        10           20        30          40        50        60 
AUAAAACUAUAUUGGCG---    C           -      -|        AAUGCAUUUCCG 
                    CAUU AUGCUGGGCUC UCAAAG UGGUUGUGA            C
                    GUAA UGCGAUUCGAG AGUUUC ACCGACACU            U
AAUACUAAACUACAUGCUAU    -           U      G^        AUACGGCGCGUU 
    120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Star sequence

Dme-Mir-2-P4a-v2_5p*

mirBase accession

MIMAT0020780

Sequence

0- CUCUCAAAGUGGUUGUGAAA -20

Get sequence

Mature sequence

Dme-Mir-2-P4a-v2_3p

mirBase accession

MIMAT0000106

Sequence

44- UCACAGCCAGCUUUGAUGAGCU -66

Get sequence

Proposed targets

microrna.org: MIMAT0000106