Mir-2-P4

MirGeneDB ID

Dma-Mir-2-P4

Family name

MIR-2 (all species)

Seed

UUGUCAG

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Dma-Mir-2-o1 Dma-Mir-2-o2 Dma-Mir-2-P1 Dma-Mir-2-P2 Dma-Mir-2-P3

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Bge-Mir-2-P4c-v1 Bge-Mir-2-P4c-v2 Bge-Mir-2-P4d-v1 Bge-Mir-2-P4d-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Hme-Mir-2-P4 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(DMA_ASM399081)

NC_046175.1: 11974083-11974146 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAUUUACGAGAAUCGUGUUGUGUGUAUUAGCUUGUCAGAGUGGUUGUGGUGUGUGUCUUUGUCGUACUCGUAUCACAGCCAGCUUUGAUGAGCGCUACGCUCGACUUGUUGCGUCGCAUACCUU

Get precursor sequence

Structure

        10           20        30        40         50        60 
GAUUUACGAGAAUCGUG---|  U     UUA   UG      -             UGUCUUU 
                    UUG GUGUA   GCU  UCAGAG UGGUUGUGGUGUG       \
                    AGC CGCAU   CGA  AGUUUC ACCGACACUAUGC       G
UUCCAUACGCUGCGUUGUUC^  U     CG-   GU      G             UCAUGCU 
  120       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Mature sequence

Dma-Mir-2-P4_5p

mirBase accession

None

Sequence

0- CUUGUCAGAGUGGUUGUGGUGUG -23

Get sequence

Star sequence

Dma-Mir-2-P4_3p*

mirBase accession

None

Sequence

40- UAUCACAGCCAGCUUUGAUGAGCG -64

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