Mir-2-P4a-v2

MirGeneDB ID

Gpa-Mir-2-P4a-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Tsetse fly (Glossina pallidipes)

MiRBase ID

Paralogues

Gpa-Mir-2-P1-v1 Gpa-Mir-2-P1-v2 Gpa-Mir-2-P2a Gpa-Mir-2-P2b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gpa-Mir-2-P5-v1 Gpa-Mir-2-P5-v2 Gpa-Mir-2-P6 Gpa-Mir-2-P7 Gpa-Mir-2-P8 Gpa-Mir-2-P9

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Glossinidae + Drosophilidae

Node of Origin (family)

Protostomia

Genome context
(GpalI1)

Scaffold18: 2343517-2343607 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UAUAUGAAAAUUUUUCGGCACUUGUCCUAGCCUCACAAAGUGGCUGUGAAAUGUUGUGAAUUAUAUGAUUUUAGUUCUAAUUCAAUCUAAAAUUGCAUAUCACAGCCAGCUUUGAUGAGCUAGGACUUGUUGCACAGUAAUCAAUUAAGCA

Get precursor sequence

Structure

        10          20        30         40         50        60        70    
UAUAUGAAAAUUUUUCG-  -  UU       C    -     -|        AAUGUUGUGAAUUAUAUGAUUUUA 
                  GC AC  GUCCUAG CUCA CAAAG UGGCUGUGA                        G
                  CG UG  CAGGAUC GAGU GUUUC ACCGACACU                        U
ACGAAUUAACUAAUGACA  U  UU       -    A     G^        AUACGUUAAAAUCUAACUUAAUCU 
 .       140       130       120        110       100        90        80

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl	Gl

Star sequence

Gpa-Mir-2-P4a-v2_5p*

mirBase accession

None

Sequence

0- CCUCACAAAGUGGCUGUGAAA -21

Get sequence

Mature sequence

Gpa-Mir-2-P4a-v2_3p

mirBase accession

None

Sequence

69- UCACAGCCAGCUUUGAUGAGCU -91

Get sequence