MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-2-P4a-v2

Family name MIR-2 (all species)
Seed CACAGCC
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-2-P1-v1  Gpa-Mir-2-P1-v2  Gpa-Mir-2-P2a  Gpa-Mir-2-P2b  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4b-v1  Gpa-Mir-2-P4b-v2  Gpa-Mir-2-P5-v1  Gpa-Mir-2-P5-v2  Gpa-Mir-2-P6  Gpa-Mir-2-P7  Gpa-Mir-2-P8  Gpa-Mir-2-P9 
Orthologues Aae-Mir-2-P4-v1  Aae-Mir-2-P4-v2  Aga-Mir-2-P4-v1  Aga-Mir-2-P4-v2  Bge-Mir-2-P4-v1  Bge-Mir-2-P4-v2  Cbr-Mir-2-o4  Cel-Mir-2-o4  Dan-Mir-2-P4a-v1  Dan-Mir-2-P4a-v2  Dma-Mir-2-P4  Dme-Mir-2-P4a-v1  Dme-Mir-2-P4a-v2  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4a-v2  Dpu-Mir-2-P4  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4a-v2  Dya-Mir-2-P4a-v1  Dya-Mir-2-P4a-v2  Gsp-Mir-2  Hme-Mir-2-P4  Isc-Mir-2-P4  Ple-Mir-2  Tca-Mir-2-P4-v1  Tca-Mir-2-P4-v2 
Node of Origin (locus) Glossinidae + Drosophilidae
Node of Origin (family) Protostomia
Genome context
(GpalI1)		 Scaffold18: 2343517-2343607 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUAUGAAAAUUUUUCGGCACUUGUCCUAGCCUCACAAAGUGGCUGUGAAAUGUUGUGAAUUAUAUGAUUUUAGUUCUAAUUCAAUCUAAAAUUGCAUAUCACAGCCAGCUUUGAUGAGCUAGGACUUGUUGCACAGUAAUCAAUUAAGCA
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Structure
        10          20        30         40         50        60        70    
UAUAUGAAAAUUUUUCG-  -  UU       C    -     -|        AAUGUUGUGAAUUAUAUGAUUUUA 
                  GC AC  GUCCUAG CUCA CAAAG UGGCUGUGA                        G
                  CG UG  CAGGAUC GAGU GUUUC ACCGACACU                        U
ACGAAUUAACUAAUGACA  U  UU       -    A     G^        AUACGUUAAAAUCUAACUUAAUCU 
 .       140       130       120        110       100        90        80
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
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Star sequence

Gpa-Mir-2-P4a-v2_5p*
mirBase accessionNone
Sequence 
0- CCUCACAAAGUGGCUGUGAAA -21
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Mature sequence

Gpa-Mir-2-P4a-v2_3p
mirBase accessionNone
Sequence 
69- UCACAGCCAGCUUUGAUGAGCU -91
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