MirGeneDB 3.0
MirGeneDB ID

Gpa-Mir-2-P2b

Family name MIR-2 (all species)
Seed AUCACAG
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-2-P1-v1  Gpa-Mir-2-P1-v2  Gpa-Mir-2-P2a  Gpa-Mir-2-P3a  Gpa-Mir-2-P3b  Gpa-Mir-2-P4a-v1  Gpa-Mir-2-P4a-v2  Gpa-Mir-2-P4b-v1  Gpa-Mir-2-P4b-v2  Gpa-Mir-2-P5-v1  Gpa-Mir-2-P5-v2  Gpa-Mir-2-P6  Gpa-Mir-2-P7  Gpa-Mir-2-P8  Gpa-Mir-2-P9 
Orthologues Aae-Mir-2-P2b  Aga-Mir-2-P2b  Bge-Mir-2-P2b  Dan-Mir-2-P2b1  Dan-Mir-2-P2b2  Dlo-Mir-2-P2b  Dma-Mir-2-o2  Dma-Mir-2-P2  Dme-Mir-2-P2b1  Dme-Mir-2-P2b2  Dmo-Mir-2-P2b1  Dmo-Mir-2-P2b2  Dpu-Mir-2-o2  Dpu-Mir-2-P2  Dsi-Mir-2-P2b1  Dsi-Mir-2-P2b2  Dya-Mir-2-P2b1  Dya-Mir-2-P2b2  Gsp-Mir-2  Hme-Mir-2-P2b  Ple-Mir-2  Tca-Mir-2-P2b 
Node of Origin (locus) Neoptera
Node of Origin (family) Protostomia
Genome context
(GpalI1)		 Scaffold6: 536660-536722 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGUGAACAAGAAUUGUUUACUAUCAGGCCGCCAAAACGGUUGUGAAUUAUGUAUUUUCUAAUAGACAUAUCACAGCCAUUUUGACGAGUUUGCUGGUGAAUUCCUUUCAACUGAAUAACU
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Structure
        10          20        30         40        50        60 
CAAAGUGAACAAGAAUU--        U     -| C     C        AU    UAUUUU 
                   GUUUACUA CAGGC CG CAAAA GGUUGUGA  UAUG      C
                   UAAGUGGU GUUUG GC GUUUU CCGACACU  AUAC      U
UCAAUAAGUCAACUUUCCU        C     A^ A     A        --    AGAUAA 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl Gl
Star sequence

Gpa-Mir-2-P2b_5p*
mirBase accessionNone
Sequence 
0- CCGCCAAAACGGUUGUGAAUUAUG -24
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Mature sequence

Gpa-Mir-2-P2b_3p
mirBase accessionNone
Sequence 
40- UAUCACAGCCAUUUUGACGAGUU -63
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