MirGeneDB ID | Gpa-Mir-2-P2b |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
Gpa-Mir-2-P1-v1
Gpa-Mir-2-P1-v2
Gpa-Mir-2-P2a
Gpa-Mir-2-P3a
Gpa-Mir-2-P3b
Gpa-Mir-2-P4a-v1
Gpa-Mir-2-P4a-v2
Gpa-Mir-2-P4b-v1
Gpa-Mir-2-P4b-v2
Gpa-Mir-2-P5-v1
Gpa-Mir-2-P5-v2
Gpa-Mir-2-P6
Gpa-Mir-2-P7
Gpa-Mir-2-P8
Gpa-Mir-2-P9
|
Orthologues |
Aae-Mir-2-P2b
Aga-Mir-2-P2b
Bge-Mir-2-P2b
Dan-Mir-2-P2b1
Dan-Mir-2-P2b2
Dlo-Mir-2-P2b
Dma-Mir-2-o2
Dma-Mir-2-P2
Dme-Mir-2-P2b1
Dme-Mir-2-P2b2
Dmo-Mir-2-P2b1
Dmo-Mir-2-P2b2
Dpu-Mir-2-o2
Dpu-Mir-2-P2
Dsi-Mir-2-P2b1
Dsi-Mir-2-P2b2
Dya-Mir-2-P2b1
Dya-Mir-2-P2b2
Gsp-Mir-2
Hme-Mir-2-P2b
Ple-Mir-2
Tca-Mir-2-P2b
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Protostomia
|
Genome context (GpalI1) |
Scaffold6: 536660-536722 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAAAGUGAACAAGAAUUGUUUACUAUCAGGCCGCCAAAACGGUUGUGAAUUAUGUAUUUUCUAAUAGACAUAUCACAGCCAUUUUGACGAGUUUGCUGGUGAAUUCCUUUCAACUGAAUAACU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAAAGUGAACAAGAAUU-- U -| C C AU UAUUUU
GUUUACUA CAGGC CG CAAAA GGUUGUGA UAUG C
UAAGUGGU GUUUG GC GUUUU CCGACACU AUAC U
UCAAUAAGUCAACUUUCCU C A^ A A -- AGAUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Star sequence |
Gpa-Mir-2-P2b_5p* |
mirBase accession | None |
Sequence |
0- CCGCCAAAACGGUUGUGAAUUAUG -24
Get sequence
|
Mature sequence |
Gpa-Mir-2-P2b_3p |
mirBase accession | None |
Sequence |
40- UAUCACAGCCAUUUUGACGAGUU -63
Get sequence
|