Mir-2-o2

MirGeneDB ID

Dma-Mir-2-o2

Family name

MIR-2 (all species)

Seed

GAUAAUU

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Dma-Mir-2-P1 Dma-Mir-2-P2 Dma-Mir-2-P3 Dma-Mir-2-P4 Dma-Mir-2-P5

Orthologues

Aae-Mir-2-P2b Aga-Mir-2-P2a Aga-Mir-2-P2b Bge-Mir-2-P2a Bge-Mir-2-P2b Csc-Mir-2-P2n Csc-Mir-2-P2o Dan-Mir-2-P2a Dan-Mir-2-P2b1 Dan-Mir-2-P2b2 Dlo-Mir-2-P2a Dlo-Mir-2-P2b Dme-Mir-2-P2a Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dmo-Mir-2-P2a Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dpu-Mir-2-o2 Dpu-Mir-2-P2 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dya-Mir-2-P2a Dya-Mir-2-P2b1 Dya-Mir-2-P2b2 Gpa-Mir-2-P2a Gpa-Mir-2-P2b Gsp-Mir-2 Hme-Mir-2-P2a Hme-Mir-2-P2b Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Ple-Mir-2 Tca-Mir-2-P2a Tca-Mir-2-P2b

Node of Origin (locus)

Daphnia

Node of Origin (family)

Protostomia

Genome context
(DMA_ASM399081)

NC_046178.1: 1060033-1060091 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUCAUUCUGGCUUCUGGAGUUUUUUAUUUCAGAUAAUUUUGUCUGUGAAAUGCUGUUUAUGUGACAUAUCACAGAUGCAAUUAAUCUGAAUUUUUUAGCUCAAUAACAUCCAUUAUAUC

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Structure

        10          20        30         40        50        
UUCAUUCUGGCUUCUGG--    UUUUAU      -|    U         A   CUGUU 
                   AGUU      UUCAGA UAAUU UGUCUGUGA AUG     U
                   UCGA      AAGUCU AUUAA GUAGACACU UAC     A
CUAUAUUACCUACAAUAAC    UUUUUU      A^    C         A   AGUGU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Mature sequence

Dma-Mir-2-o2_5p

mirBase accession

None

Sequence

0- AGAUAAUUUUGUCUGUGAAAUG -22

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Star sequence

Dma-Mir-2-o2_3p*

mirBase accession

None

Sequence

36- UAUCACAGAUGCAAUUAAUCUGA -59

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