MirGeneDB ID | Lpo-Mir-2-P2j |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-2-P1g
Lpo-Mir-2-P1h
Lpo-Mir-2-P1i
Lpo-Mir-2-P1j
Lpo-Mir-2-P1k
Lpo-Mir-2-P1l
Lpo-Mir-2-P1m
Lpo-Mir-2-P2g
Lpo-Mir-2-P2h
Lpo-Mir-2-P2l
Lpo-Mir-2-P2m
Lpo-Mir-2-P3g
Lpo-Mir-2-P3h
Lpo-Mir-2-P3i
Lpo-Mir-2-P3k
Lpo-Mir-2-P3l
Lpo-Mir-2-P3m
Lpo-Mir-2-P4h
Lpo-Mir-2-P4i
Lpo-Mir-2-P4j
Lpo-Mir-2-P4k
Lpo-Mir-2-P4l
|
Orthologues |
Dma-Mir-2-o2
Dma-Mir-2-P2
Dpu-Mir-2-o2
Dpu-Mir-2-P2
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666453.1: 404784-404843 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGACCAGAAGAAGCACAUGCCUCGCUUGGCCGCCACUAUGGCAGUGAUAUGUUAUGCACAAAAUCAUAUCACAGUCAUCUUGACGUGUCUUGAGAGGAUAAUUUUACUUCUUUGCUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGACCAGAAGAAGCACAUG-- GCUU -| C CU A UUAUGC
CCUC GGC CG CA AUGGC GUGAUAUG \
GGAG CUG GC GU UACUG CACUAUAC A
UACUCGUUUCUUCAUUUUAAUA AGUU U^ A UC A UAAAAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-2-P2j_5p* |
mirBase accession | None |
Sequence |
0- CCGCCACUAUGGCAGUGAUAUG -22
Get sequence
|
Mature sequence |
Lpo-Mir-2-P2j_3p |
mirBase accession | None |
Sequence |
37- UAUCACAGUCAUCUUGACGUGUC -60
Get sequence
|