MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-2-P3l

Family name MIR-2 (all species)
Seed AUCACAG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Lpo-Mir-2-P2g  Lpo-Mir-2-P2h  Lpo-Mir-2-P2j  Lpo-Mir-2-P2l  Lpo-Mir-2-P2m  Lpo-Mir-2-P3g  Lpo-Mir-2-P3h  Lpo-Mir-2-P3i  Lpo-Mir-2-P3k  Lpo-Mir-2-P3m  Lpo-Mir-2-P4h  Lpo-Mir-2-P4i  Lpo-Mir-2-P4j  Lpo-Mir-2-P4k  Lpo-Mir-2-P4l 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Bge-Mir-2-P3-v1  Bge-Mir-2-P3-v2  Cbr-Mir-2-o3  Cel-Mir-2-o3  Dlo-Mir-2-P3-v1  Dlo-Mir-2-P3-v2  Dma-Mir-2-P3  Dpu-Mir-2-P3  Gsp-Mir-2  Hme-Mir-2-P3-v1  Hme-Mir-2-P3-v2  Isc-Mir-2-P3  Ple-Mir-2  Tca-Mir-2-P3-v1  Tca-Mir-2-P3-v2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666934.1: 93277-93337 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUGGAUGUUUGAAGUUGAACCCGCCCCACUCACAAAGUGACUGUUAUAUGUAGAGCUAGUUUUCAUAUCACAGCCAACUUUGAUGAGUGAGGAGGGUAAAUGGAAACACUUCAGUUGCU
Get precursor sequence
Structure
        10        20          30         40         50         
AGCUGGAUGUUUGAAGUUGA--    G  C      -      GA-|   U     UAGAGC 
                      ACCC CC CACUCA CAAAGU   CUGU AUAUG      \
                      UGGG GG GUGAGU GUUUCA   GACA UAUAC      U
UCGUUGACUUCACAAAGGUAAA    A  A      A      ACC^   C     UUUUGA 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-2-P3l_5p*
mirBase accessionNone
Sequence 
0- CUCACAAAGUGACUGUUAUAUG -22
Get sequence
Mature sequence

Lpo-Mir-2-P3l_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCAACUUUGAUGAGUG -61
Get sequence