Mir-2-P3

MirGeneDB ID

Aga-Mir-2-P3

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

aga-mir-2b

Paralogues

Aga-Mir-2-P1-v1 Aga-Mir-2-P1-v2 Aga-Mir-2-P2a Aga-Mir-2-P2b Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Aga-Mir-2-P5a1 Aga-Mir-2-P5a2 Aga-Mir-2-P5b Aga-Mir-2-P7 Aga-Mir-2-P8

Orthologues

Aae-Mir-2-P3 Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gsp-Mir-2 Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Ple-Mir-2 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064601.1: 106556572-106556654 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3)

Mir-2-P4-v1 NC_064601.1: 106556282-106556351 [-] Ensembl
Mir-2-P4-v2 NC_064601.1: 106556284-106556349 [-] Ensembl
Mir-2-P3 NC_064601.1: 106556572-106556654 [-] Ensembl
Mir-2-P2b NC_064601.1: 106556743-106556806 [-] Ensembl
Mir-2-P2a NC_064601.1: 106557252-106557346 [-] Ensembl
Mir-2-P1-v1 NC_064601.1: 106557875-106557936 [-] Ensembl
Mir-2-P1-v2 NC_064601.1: 106557875-106557936 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AACAACGUGUCCCUCGUUGUCACUUUGACCCUCUCAAAGUGGCUGUGAAAUGCGUCCUUCAUUGUGUAAGGGAAGAUUCCUUUUUCGCAUAUCACAGCCAGCUUUGAAGAGCGUCACGGUGGCGUAAACUCACCACCACCAGC

Get precursor sequence

Structure

        10          20        30          40        50        60          
AACAACGUGUCCCUCGU--       U    C   -      -|        A   CGUCCUUCAUUGUGUAA 
                   UGUCACU UGAC CUC UCAAAG UGGCUGUGA AUG                 \
                   GCGGUGG ACUG GAG AGUUUC ACCGACACU UAC                 G
CGACCACCACCACUCAAAU       C    C   A      G^        A   GCUUUUUCCUUAGAAGG 
 140       130       120       110       100        90        80

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr

Star sequence

Aga-Mir-2-P3_5p*

mirBase accession

MIMAT0041564

Sequence

0- CUCUCAAAGUGGCUGUGAAAUG -22

Get sequence

Mature sequence

Aga-Mir-2-P3_3p

mirBase accession

MIMAT0041565

Sequence

59- UAUCACAGCCAGCUUUGAAGAGCG -83

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