Mir-2-P1-v2

MirGeneDB ID

Aga-Mir-2-P1-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

aga-mir-2-2

Paralogues

Aga-Mir-2-P1-v1 Aga-Mir-2-P2a Aga-Mir-2-P2b Aga-Mir-2-P3 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Aga-Mir-2-P5a1 Aga-Mir-2-P5a2 Aga-Mir-2-P5b Aga-Mir-2-P7 Aga-Mir-2-P8

Orthologues

Aae-Mir-2-P1-v1 Aae-Mir-2-P1-v2 Bge-Mir-2-P1-v1 Bge-Mir-2-P1-v2 Csc-Mir-2-P1n Csc-Mir-2-P1o Dan-Mir-2-P1-v1 Dan-Mir-2-P1-v2 Dlo-Mir-2-P1-v1 Dlo-Mir-2-P1-v2 Dma-Mir-2-P1 Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dmo-Mir-2-P1 Dpu-Mir-2-P1 Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dya-Mir-2-P1-v1 Dya-Mir-2-P1-v2 Gpa-Mir-2-P1-v1 Gpa-Mir-2-P1-v2 Gsp-Mir-2 Hme-Mir-2-P1-v1 Hme-Mir-2-P1-v2 Isc-Mir-2-P1 Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Ple-Mir-2 Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064601.1: 106557875-106557936 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P1-v2)

Mir-2-P4-v1 NC_064601.1: 106556282-106556351 [-] Ensembl
Mir-2-P4-v2 NC_064601.1: 106556284-106556349 [-] Ensembl
Mir-2-P3 NC_064601.1: 106556572-106556654 [-] Ensembl
Mir-2-P2b NC_064601.1: 106556743-106556806 [-] Ensembl
Mir-2-P2a NC_064601.1: 106557252-106557346 [-] Ensembl
Mir-2-P1-v1 NC_064601.1: 106557875-106557936 [-] Ensembl
Mir-2-P1-v2 NC_064601.1: 106557875-106557936 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGCCAACAAUAUAUUGGGUGCCAUGCAUUGUCAUCAAACUUGGUUGUUGUAGCUUGCUUUGAUAGUUGCUAUCACAGCCAGCUUUGAUGAGCAAUGCGUCACUUACCUACCUGCAUCGAAGA

Get precursor sequence

Structure

        10           20        30         40        50        60
UGCCAACAAUAUAUUGG---|  CC        -        C        U   GCUUGCUU 
                    GUG  AUGCAUUG UCAUCAAA UUGGUUGU GUA        U
                    CAC  UGCGUAAC AGUAGUUU GACCGACA UAU        G
AGAAGCUACGUCCAUCCAUU^  --        G        C        C   CGUUGAUA 
120       110       100          90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ab	Ab	He	He	Mi	Mi	Ov	Ov	Ov

Star sequence

Aga-Mir-2-P1-v2_5p*

mirBase accession

None

Sequence

0- UCAUCAAACUUGGUUGUUGUA -21

Get sequence

Mature sequence

Aga-Mir-2-P1-v2_3p

mirBase accession

MIMAT0009202

Sequence

41- UCACAGCCAGCUUUGAUGAGC -62

Get sequence