MirGeneDB 3.0
MirGeneDB ID

Aga-Mir-2-P1-v2

Family name MIR-2 (all species)
Seed CACAGCC
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-2-2
Paralogues Aga-Mir-2-P1-v1  Aga-Mir-2-P2a  Aga-Mir-2-P2b  Aga-Mir-2-P3  Aga-Mir-2-P4-v1  Aga-Mir-2-P4-v2  Aga-Mir-2-P5a1  Aga-Mir-2-P5a2  Aga-Mir-2-P5b  Aga-Mir-2-P7  Aga-Mir-2-P8 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dlo-Mir-2-P1-v1  Dlo-Mir-2-P1-v2  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Gpa-Mir-2-P1-v1  Gpa-Mir-2-P1-v2  Gsp-Mir-2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Ple-Mir-2  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)		 NC_064601.1: 106557875-106557936 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1-v2)		 Mir-2-P4-v1 NC_064601.1: 106556282-106556351 [-] Ensembl
Mir-2-P4-v2 NC_064601.1: 106556284-106556349 [-] Ensembl
Mir-2-P3 NC_064601.1: 106556572-106556654 [-] Ensembl
Mir-2-P2b NC_064601.1: 106556743-106556806 [-] Ensembl
Mir-2-P2a NC_064601.1: 106557252-106557346 [-] Ensembl
Mir-2-P1-v1 NC_064601.1: 106557875-106557936 [-] Ensembl
Mir-2-P1-v2 NC_064601.1: 106557875-106557936 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCAACAAUAUAUUGGGUGCCAUGCAUUGUCAUCAAACUUGGUUGUUGUAGCUUGCUUUGAUAGUUGCUAUCACAGCCAGCUUUGAUGAGCAAUGCGUCACUUACCUACCUGCAUCGAAGA
Get precursor sequence
Structure
        10           20        30         40        50        60
UGCCAACAAUAUAUUGG---|  CC        -        C        U   GCUUGCUU 
                    GUG  AUGCAUUG UCAUCAAA UUGGUUGU GUA        U
                    CAC  UGCGUAAC AGUAGUUU GACCGACA UAU        G
AGAAGCUACGUCCAUCCAUU^  --        G        C        C   CGUUGAUA 
120       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Aga-Mir-2-P1-v2_5p*
mirBase accessionNone
Sequence 
0- UCAUCAAACUUGGUUGUUGUA -21
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Mature sequence

Aga-Mir-2-P1-v2_3p
mirBase accessionMIMAT0009202
Sequence 
41- UCACAGCCAGCUUUGAUGAGC -62
Get sequence