MirGeneDB 2.1

MirGeneDB ID

Aae-Mir-2-P1-v2

Family name MIR-2 (all species)
Seed CACAGCC
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-2c
Paralogues Aae-Mir-2-P1-v1  Aae-Mir-2-P2  Aae-Mir-2-P3  Aae-Mir-2-P4-v1  Aae-Mir-2-P4-v2  Aae-Mir-2-P5a  Aae-Mir-2-P5b  Aae-Mir-2-P7  Aae-Mir-2-P8 
Orthologues Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dma-Mir-2-o1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dpu-Mir-2-o1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Aaeg_L3)
supercont1.268: 889091-889155 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1-v2)
Mir-2-P4-v1 supercont1.268: 887257-887317 [-] Ensembl
Mir-2-P4-v2 supercont1.268: 887257-887317 [-] Ensembl
Mir-2-P3 supercont1.268: 888597-888663 [-] Ensembl
Mir-2-P2 supercont1.268: 888744-888807 [-] Ensembl
Mir-2-P1-v1 supercont1.268: 889091-889155 [-] Ensembl
Mir-2-P1-v2 supercont1.268: 889091-889155 [-] Ensembl
Mir-71 supercont1.268: 889383-889449 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAACUCACGCUGCUGAGUGGCAUGCGUUGGCAUCAAAUUUGGUUGUUUUAGUACGACCUCUUUGAAACCCCUAUCACAGCCAGCUUUGAUGAGCAACGCACCACUCAUACUCACGAAUGCUUCG
Get precursor sequence
Structure
        10           20        30         40        50        60  
GGAACUCACGCUGCUGA---|   CA       G-       U        UU  GUACGACCUC 
                    GUGG  UGCGUUG  CAUCAAA UUGGUUGU  UA          \
                    CACC  ACGCAAC  GUAGUUU GACCGACA  AU          U
GCUUCGUAAGCACUCAUACU^   --       GA       C        CU  CCCCAAAGUU 
   120       110         100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Aae-Mir-2-P1-v2_5p*

mirBase accessionNone
Sequence
0- GCAUCAAAUUUGGUUGUUUUA -21
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Mature sequence

Aae-Mir-2-P1-v2_3p

mirBase accessionMIMAT0014308
Sequence
44- UCACAGCCAGCUUUGAUGAGC -65
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