Mir-2-P1-v2

MirGeneDB ID

Hme-Mir-2-P1-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Longwing butterfly (Heliconius melpomene)

MiRBase ID

hme-mir-2a

Paralogues

Hme-Mir-2-P1-v1 Hme-Mir-2-P2a Hme-Mir-2-P2b Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Hme-Mir-2-P4 Hme-Mir-2-P7 Hme-Mir-2-P8

Orthologues

Aae-Mir-2-P1-v1 Aae-Mir-2-P1-v2 Aga-Mir-2-P1-v1 Aga-Mir-2-P1-v2 Bge-Mir-2-P1-v1 Bge-Mir-2-P1-v2 Csc-Mir-2-P1n Csc-Mir-2-P1o Dan-Mir-2-P1-v1 Dan-Mir-2-P1-v2 Dlo-Mir-2-P1-v1 Dlo-Mir-2-P1-v2 Dma-Mir-2-P1 Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dmo-Mir-2-P1 Dpu-Mir-2-P1 Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dya-Mir-2-P1-v1 Dya-Mir-2-P1-v2 Gpa-Mir-2-P1-v1 Gpa-Mir-2-P1-v2 Gsp-Mir-2 Isc-Mir-2-P1 Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Ple-Mir-2 Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Hmel_1)

HE671256: 344481-344540 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P1-v2)

Mir-71 HE671256: 336024-336085 [+] Ensembl
Mir-2-P1-v2 HE671256: 344481-344540 [+] Ensembl
Mir-2-P1-v1 HE671256: 344483-344538 [+] Ensembl
Mir-2-P2a HE671256: 344637-344695 [+] Ensembl
Mir-2-P2b HE671256: 344775-344830 [+] Ensembl
Mir-2-P3-v2 HE671256: 344897-344955 [+] Ensembl
Mir-2-P3-v1 HE671256: 344898-344954 [+] Ensembl
Mir-2-P4 HE671256: 345032-345089 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCAGAUGUCUGCACUGAAUGUGGUCCUGUCAUCAAAGUCGGUUUGUCAUAGAUCACCACGUAACUAUCACAGCCAGCUUUGAUGAGCACGACUGCAUUUGUCACACCAUAUCAACCAA

Get precursor sequence

Structure

        10          20        30         40        50         
UUUCAGAUGUCUGCACU--     UG   C  -|         C    U  C   GAUCAC 
                   GAAUG  GUC UG UCAUCAAAGU GGUU GU AUA      C
                   UUUAC  CAG AC AGUAGUUUCG CCGA CA UAU      A
AACCAACUAUACCACACUG     GU   C  G^         A    -  C   CAAUGC 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Fe	Fe	Fe	Fe	Ma	Ma

Star sequence

Hme-Mir-2-P1-v2_5p*

mirBase accession

None

Sequence

0- UCAUCAAAGUCGGUUUGUCAUA -22

Get sequence

Mature sequence

Hme-Mir-2-P1-v2_3p

mirBase accession

MIMAT0024971

Sequence

38- UCACAGCCAGCUUUGAUGAGCA -60

Get sequence