MirGeneDB 2.1

MirGeneDB ID

Hme-Mir-2-P1-v2

Family name MIR-2 (all species)
Seed CACAGCC
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-2a
Paralogues Hme-Mir-2-P1-v1  Hme-Mir-2-P2c  Hme-Mir-2-P2d  Hme-Mir-2-P3-v1  Hme-Mir-2-P3-v2  Hme-Mir-2-P4  Hme-Mir-2-P7  Hme-Mir-2-P8 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dma-Mir-2-o1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dpu-Mir-2-o1  Dpu-Mir-2-P1  Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Hmel_1)
HE671256: 344481-344540 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1-v2)
Mir-71 HE671256: 336024-336085 [+] Ensembl
Mir-2-P1-v2 HE671256: 344481-344540 [+] Ensembl
Mir-2-P1-v1 HE671256: 344483-344538 [+] Ensembl
Mir-2-P2c HE671256: 344637-344695 [+] Ensembl
Mir-2-P2d HE671256: 344775-344830 [+] Ensembl
Mir-2-P3-v2 HE671256: 344897-344955 [+] Ensembl
Mir-2-P3-v1 HE671256: 344898-344954 [+] Ensembl
Mir-2-P4 HE671256: 345032-345089 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAGAUGUCUGCACUGAAUGUGGUCCUGUCAUCAAAGUCGGUUUGUCAUAGAUCACCACGUAACUAUCACAGCCAGCUUUGAUGAGCACGACUGCAUUUGUCACACCAUAUCAACCAA
Get precursor sequence
Structure
        10          20        30         40        50         
UUUCAGAUGUCUGCACU--     UG   C  -|         C    U  C   GAUCAC 
                   GAAUG  GUC UG UCAUCAAAGU GGUU GU AUA      C
                   UUUAC  CAG AC AGUAGUUUCG CCGA CA UAU      A
AACCAACUAUACCACACUG     GU   C  G^         A    -  C   CAAUGC 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-2-P1-v2_5p*

mirBase accessionNone
Sequence
0- UCAUCAAAGUCGGUUUGUCAUA -22
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Mature sequence

Hme-Mir-2-P1-v2_3p

mirBase accessionMIMAT0024971
Sequence
38- UCACAGCCAGCUUUGAUGAGCA -60
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