MirGeneDB 2.1

MirGeneDB ID

Dsi-Mir-2-P1-v1

Family name MIR-2 (all species)
Seed CACAGCC
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-2c
Paralogues Dsi-Mir-2-P1-v2  Dsi-Mir-2-P2a  Dsi-Mir-2-P2b1  Dsi-Mir-2-P2b2  Dsi-Mir-2-P3a  Dsi-Mir-2-P3b  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4a-v2  Dsi-Mir-2-P4b-v1  Dsi-Mir-2-P4b-v2  Dsi-Mir-2-P5  Dsi-Mir-2-P6a  Dsi-Mir-2-P6b  Dsi-Mir-2-P6c  Dsi-Mir-2-P7  Dsi-Mir-2-P8  Dsi-Mir-2-P9-v1  Dsi-Mir-2-P9-v2 
Orthologues Aae-Mir-2-P1-v1  Aae-Mir-2-P1-v2  Bge-Mir-2-P1-v1  Bge-Mir-2-P1-v2  Csc-Mir-2-P1n  Csc-Mir-2-P1o  Dan-Mir-2-P1-v1  Dan-Mir-2-P1-v2  Dma-Mir-2-o1  Dma-Mir-2-P1  Dme-Mir-2-P1-v1  Dme-Mir-2-P1-v2  Dmo-Mir-2-P1  Dpu-Mir-2-o1  Dpu-Mir-2-P1  Dya-Mir-2-P1-v1  Dya-Mir-2-P1-v2  Hme-Mir-2-P1-v1  Hme-Mir-2-P1-v2  Isc-Mir-2-P1  Lpo-Mir-2-P1g  Lpo-Mir-2-P1h  Lpo-Mir-2-P1i  Lpo-Mir-2-P1j  Lpo-Mir-2-P1k  Lpo-Mir-2-P1l  Lpo-Mir-2-P1m  Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2 
Node of Origin (locus) Arthropoda
Node of Origin (family) Protostomia
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
3R: 9985314-9985380 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P1-v1)
Mir-2-P1-v1 3R: 9985314-9985380 [+] UCSC Ensembl
Mir-2-P1-v2 3R: 9985314-9985380 [+] UCSC Ensembl
Mir-2-P2a 3R: 9985528-9985590 [+] UCSC Ensembl
Mir-2-P2b1 3R: 9985663-9985722 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGACGUUACCUCGUAUCUUACUUUCAAUGUCAUCAAAAAGGGCUGAAGAAAGAUAUUUCUGCAUUUGAAUCGUAUCACAGCCAGCUUUGAUGGGCAUUGCAAUGAGCAGCGAUAGCAAAGUGUGAC
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Structure
        10           20        30         40        50        60  
UCGACGUUACCUCGUAU---|   C  U       -      AAG     AAGAAAGAUAUUUCU 
                    CUUA UU CAAUGUC AUCAAA   GGCUG               G
                    GAGU AA GUUACGG UAGUUU   CCGAC               C
CAGUGUGAAACGAUAGCGAC^   -  C       G      CGA     ACUAUGCUAAGUUUA 
     120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
He Wh
Star sequence

Dsi-Mir-2-P1-v1_5p*

mirBase accessionNone
Sequence
0- UCAUCAAAAAGGGCUGAAGAAA -22
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Mature sequence

Dsi-Mir-2-P1-v1_3p

mirBase accessionMIMAT0008854
Sequence
45- UCACAGCCAGCUUUGAUGGGCA -67
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