MirGeneDB ID | Dsi-Mir-2-P7 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Fruit fly (Drosophila simulans) |
MiRBase ID |
dsi-mir-11
|
Paralogues |
Dsi-Mir-2-P1-v1
Dsi-Mir-2-P1-v2
Dsi-Mir-2-P2a
Dsi-Mir-2-P2b1
Dsi-Mir-2-P2b2
Dsi-Mir-2-P3a
Dsi-Mir-2-P3b
Dsi-Mir-2-P4a-v1
Dsi-Mir-2-P4a-v2
Dsi-Mir-2-P4b-v1
Dsi-Mir-2-P4b-v2
Dsi-Mir-2-P5
Dsi-Mir-2-P6a
Dsi-Mir-2-P6b
Dsi-Mir-2-P6c
Dsi-Mir-2-P8
Dsi-Mir-2-P9-v1
Dsi-Mir-2-P9-v2
|
Orthologues |
Aae-Mir-2-P7
Aga-Mir-2-P7
Asu-Mir-2-o7a
Asu-Mir-2-o7b
Bge-Mir-2-P7
Dan-Mir-2-P7
Dlo-Mir-2-P7
Dme-Mir-2-P7
Dmo-Mir-2-P7
Dya-Mir-2-P7
Gpa-Mir-2-P7
Gsp-Mir-2
Hme-Mir-2-P7
Ple-Mir-2
Tca-Mir-2-P7
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Protostomia
|
Genome context (Drosophila_simulans.ASM75419v3.dna.toplevel) |
3R: 3864432-3864492 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCAUUUAGAUCUCCAUGAGGCGCACUUGUCAAGAACUUUCUCUGUGACCCGCGUGUACUUAAAAGCCGCAUCACAGUCUGAGUUCUUGCUGAGUGCGAAAUCCUCGAAGCAACAUUAAGC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCAUUUAGAUCUCCAU- GG-| U UCU CC CGUGUAC
GA CGCACUUG CAAGAACUU CUGUGA CG \
CU GCGUGAGU GUUCUUGAG GACACU GC U
CGAAUUACAACGAAGCUC AAA^ C UCU AC CGAAAAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Dsi-Mir-2-P7_5p* |
mirBase accession | None |
Sequence |
0- CAAGAACUUUCUCUGUGACCCG -22
Get sequence
|
Mature sequence |
Dsi-Mir-2-P7_3p |
mirBase accession | MIMAT0008865 |
Sequence |
39- CAUCACAGUCUGAGUUCUUGCU -61
Get sequence
|