MirGeneDB 3.0

MirGeneDB ID

Dsi-Mir-2-P3a

Family name MIR-2 (all species)
Seed AUCACAG
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-2b-1
Paralogues Dsi-Mir-2-P1-v1  Dsi-Mir-2-P1-v2  Dsi-Mir-2-P2a  Dsi-Mir-2-P2b1  Dsi-Mir-2-P2b2  Dsi-Mir-2-P3b  Dsi-Mir-2-P4a-v1  Dsi-Mir-2-P4a-v2  Dsi-Mir-2-P4b-v1  Dsi-Mir-2-P4b-v2  Dsi-Mir-2-P5  Dsi-Mir-2-P6a  Dsi-Mir-2-P6b  Dsi-Mir-2-P6c  Dsi-Mir-2-P7  Dsi-Mir-2-P8  Dsi-Mir-2-P9-v1  Dsi-Mir-2-P9-v2 
Orthologues Aae-Mir-2-P3  Aga-Mir-2-P3  Bge-Mir-2-P3-v1  Bge-Mir-2-P3-v2  Cbr-Mir-2-o3  Cel-Mir-2-o3  Dan-Mir-2-P3a-v1  Dan-Mir-2-P3a-v2  Dlo-Mir-2-P3-v1  Dlo-Mir-2-P3-v2  Dma-Mir-2-P3  Dme-Mir-2-P3a  Dpu-Mir-2-P3  Dya-Mir-2-P3a  Gpa-Mir-2-P3a  Gsp-Mir-2  Hme-Mir-2-P3-v1  Hme-Mir-2-P3-v2  Isc-Mir-2-P3  Ple-Mir-2  Tca-Mir-2-P3-v1  Tca-Mir-2-P3-v2 
Node of Origin (locus) Glossinidae + Drosophilidae
Node of Origin (family) Protostomia
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2L: 7986266-7986328 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAAAUCAAAAGAACUGAAAACUUCAACUGUCUUCAAAGUGGCGGUGACAUGUUGUCAACAAUAUUCAUAUCACAGCCAGCUUUGAGGAGCGUUGCGGUUUUUCACGCCCGACGACUUAAAA
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Structure
        10          20        30        40         50        60
UGCAAAUCAAAAGAACU--       U    UG         -|   G    C   UUGUCA 
                   GAAAACU CAAC  UCUUCAAAG UGGC GUGA AUG      A
                   UUUUUGG GUUG  AGGAGUUUC ACCG CACU UAC      C
AAAAUUCAGCAGCCCGCAC       C    CG         G^   A    A   UUAUAA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dsi-Mir-2-P3a_5p*

mirBase accessionNone
Sequence
0- GUCUUCAAAGUGGCGGUGACAUG -23
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Mature sequence

Dsi-Mir-2-P3a_3p

mirBase accessionMIMAT0008858
Sequence
39- UAUCACAGCCAGCUUUGAGGAGCG -63
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