MirGeneDB ID | Dsi-Mir-2-P3a |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Fruit fly (Drosophila simulans) |
MiRBase ID |
dsi-mir-2b-1
|
Paralogues |
Dsi-Mir-2-P1-v1
Dsi-Mir-2-P1-v2
Dsi-Mir-2-P2a
Dsi-Mir-2-P2b1
Dsi-Mir-2-P2b2
Dsi-Mir-2-P3b
Dsi-Mir-2-P4a-v1
Dsi-Mir-2-P4a-v2
Dsi-Mir-2-P4b-v1
Dsi-Mir-2-P4b-v2
Dsi-Mir-2-P5
Dsi-Mir-2-P6a
Dsi-Mir-2-P6b
Dsi-Mir-2-P6c
Dsi-Mir-2-P7
Dsi-Mir-2-P8
Dsi-Mir-2-P9-v1
Dsi-Mir-2-P9-v2
|
Orthologues |
Aae-Mir-2-P3
Aga-Mir-2-P3
Bge-Mir-2-P3-v1
Bge-Mir-2-P3-v2
Cbr-Mir-2-o3
Cel-Mir-2-o3
Dan-Mir-2-P3a-v1
Dan-Mir-2-P3a-v2
Dlo-Mir-2-P3-v1
Dlo-Mir-2-P3-v2
Dma-Mir-2-P3
Dme-Mir-2-P3a
Dpu-Mir-2-P3
Dya-Mir-2-P3a
Gpa-Mir-2-P3a
Gsp-Mir-2
Hme-Mir-2-P3-v1
Hme-Mir-2-P3-v2
Isc-Mir-2-P3
Ple-Mir-2
Tca-Mir-2-P3-v1
Tca-Mir-2-P3-v2
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
|
Node of Origin (family) |
Protostomia
|
Genome context (Drosophila_simulans.ASM75419v3.dna.toplevel) |
2L: 7986266-7986328 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCAAAUCAAAAGAACUGAAAACUUCAACUGUCUUCAAAGUGGCGGUGACAUGUUGUCAACAAUAUUCAUAUCACAGCCAGCUUUGAGGAGCGUUGCGGUUUUUCACGCCCGACGACUUAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCAAAUCAAAAGAACU-- U UG -| G C UUGUCA
GAAAACU CAAC UCUUCAAAG UGGC GUGA AUG A
UUUUUGG GUUG AGGAGUUUC ACCG CACU UAC C
AAAAUUCAGCAGCCCGCAC C CG G^ A A UUAUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dsi-Mir-2-P3a_5p* |
mirBase accession | None |
Sequence |
0- GUCUUCAAAGUGGCGGUGACAUG -23
Get sequence
|
Mature sequence |
Dsi-Mir-2-P3a_3p |
mirBase accession | MIMAT0008858 |
Sequence |
39- UAUCACAGCCAGCUUUGAGGAGCG -63
Get sequence
|