Mir-2-P3-v2

MirGeneDB ID

Hme-Mir-2-P3-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Longwing butterfly (Heliconius melpomene)

MiRBase ID

hme-mir-2b

Paralogues

Hme-Mir-2-P1-v1 Hme-Mir-2-P1-v2 Hme-Mir-2-P2a Hme-Mir-2-P2b Hme-Mir-2-P3-v1 Hme-Mir-2-P4 Hme-Mir-2-P7 Hme-Mir-2-P8

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gsp-Mir-2 Isc-Mir-2-P3 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Ple-Mir-2 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(Hmel_1)

HE671256: 344897-344955 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P3-v2)

Mir-71 HE671256: 336024-336085 [+] Ensembl
Mir-2-P1-v2 HE671256: 344481-344540 [+] Ensembl
Mir-2-P1-v1 HE671256: 344483-344538 [+] Ensembl
Mir-2-P2a HE671256: 344637-344695 [+] Ensembl
Mir-2-P2b HE671256: 344775-344830 [+] Ensembl
Mir-2-P3-v2 HE671256: 344897-344955 [+] Ensembl
Mir-2-P3-v1 HE671256: 344898-344954 [+] Ensembl
Mir-2-P4 HE671256: 345032-345089 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CCGGUAUAGUCAUCGGGCAGGUCGAGUGUCACUCACGAAGUGGUUGUAGUAUGUCUCCAGUCCAUAUCACAGCCAGCUUUGAUGAGCGACAAUUGGCGAACUGGCGACUGCUGCGCGAC

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Structure

        10        20          30         40         50        
CCGGUAUAGUCAUCGGGCAG--     G    A    -     -|      A   UGUCUC 
                      GUCGA UGUC CUCA CGAAG UGGUUGU GUA      \
                      CGGUU ACAG GAGU GUUUC ACCGACA UAU      C
CAGCGCGUCGUCAGCGGUCAAG     A    C    A     G^      C   ACCUGA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Fe	Fe	Fe	Fe	Ma	Ma

Star sequence

Hme-Mir-2-P3-v2_5p* (predicted)

mirBase accession

None

Sequence

0- ACUCACGAAGUGGUUGUAGUA -21

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Mature sequence

Hme-Mir-2-P3-v2_3p

mirBase accession

MIMAT0024972

Sequence

36- UCACAGCCAGCUUUGAUGAGCGA -59

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