Mir-2-P3-v2

MirGeneDB ID

Dlo-Mir-2-P3-v2

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Braconid wasp (Diachasmimorpha longicaudata)

MiRBase ID

Paralogues

Dlo-Mir-2-P1-v1 Dlo-Mir-2-P1-v2 Dlo-Mir-2-P2a Dlo-Mir-2-P2b Dlo-Mir-2-P3-v1 Dlo-Mir-2-P5 Dlo-Mir-2-P7

Orthologues

Aae-Mir-2-P3 Aga-Mir-2-P3 Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Cbr-Mir-2-o3 Cel-Mir-2-o3 Csc-Mir-2-P3n Csc-Mir-2-P3o Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dma-Mir-2-P3 Dme-Mir-2-P3a Dme-Mir-2-P3b Dmo-Mir-2-P3b Dpu-Mir-2-P3 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dya-Mir-2-P3a Dya-Mir-2-P3b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gsp-Mir-2 Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Isc-Mir-2-P3 Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Ple-Mir-2 Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(GCF_034640455.1_iyDiaLong2_genomic)

NC_087235.1: 3200363-3200424 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AGGAGGACGAGGACGAAGAUAGCUGCGUCGCUCACAGAGUGGCUGUUGUAUGUGGUGGAUUUUUUUCAUAUCACAGCCAGCUUUGAUGAGCGUCGCGACAUCUUGAAUUCAAUGAUUAUCGA

Get precursor sequence

Structure

        10           20        30          40        50         
AGGAGGACGAGGACGAA---   AGC    U      -     -|      U    GUGGUGG 
                    GAU   UGCG CGCUCA CAGAG UGGCUGU GUAU       A
                    CUA   GCGC GCGAGU GUUUC ACCGACA UAUA       U
AGCUAUUAGUAACUUAAGUU   CA-    U      A     G^      C    CUUUUUU 
120       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Sr	Sr

Star sequence

Dlo-Mir-2-P3-v2_5p*

mirBase accession

None

Sequence

0- CUCACAGAGUGGCUGUUGUAU -21

Get sequence

Mature sequence

Dlo-Mir-2-P3-v2_3p

mirBase accession

None

Sequence

40- UCACAGCCAGCUUUGAUGAGCG -62

Get sequence